View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11386A_low_170 (Length: 310)

Name: NF11386A_low_170
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11386A_low_170
NF11386A_low_170
[»] chr6 (11 HSPs)
chr6 (6-301)||(14024097-14024392)
chr6 (164-262)||(14046176-14046274)
chr6 (140-228)||(14106451-14106539)
chr6 (164-262)||(13474180-13474278)
chr6 (172-216)||(13910619-13910663)
chr6 (172-236)||(14109243-14109307)
chr6 (7-76)||(14106330-14106399)
chr6 (6-71)||(13863775-13863840)
chr6 (174-242)||(13894205-13894274)
chr6 (164-228)||(14083495-14083557)
chr6 (193-262)||(14021506-14021575)


Alignment Details
Target: chr6 (Bit Score: 272; Significance: 1e-152; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 6 - 301
Target Start/End: Original strand, 14024097 - 14024392
Alignment:
Q  6 atcatcttcctagagttacaagggaaataattcacaaagccttcaataaagaggagaaactatttatcttcgtggagaaggactttcttgcacaccttaa 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  14024097 atcatcttcctagagttacaagggaaataattcacaaagccttcaataaagaggagatactatttatcttcgtggagaaggactttcttgcacaccttaa 14024196  T
Q  106 tatgatccacaacacactatccagtagcctttattgaagattcacaagattttgccaacctatataatagtttaagtattaaccactttagatataaagt 205  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14024197 tatgatccacaacacactatccagtagccttgattgaagattcacaagattttgccaacctatataatagtttaagtattaaccactttagatataaagt 14024296  T
Q  206 ctaaaatataaaattttaaaaaagttgaaacttgaaatacaatatcatgaaagataaatgtaggtatatatgacaggtctaaagttaaagtattat 301  Q
    ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||    
T  14024297 ctaaaatttaaaattttaaaaaagttgaaacttgaaaaacaatatcatgaaagataaatgtaagtatatatgagaggtctaaagttaaagtattat 14024392  T

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Target: chr6; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 164 - 262
Target Start/End: Original strand, 14046176 - 14046274
Alignment:
Q  164 cctatataatagtttaagtattaaccactttagatataaagtctaaaatataaaattttaaaaaagttgaaacttgaaatacaatatcatgaaagataa 262  Q
    ||||||||||||||||||| |||||| | ||||||| |||||| |||||||||| ||||| |||| ||| ||||||||| |||||||||||||||||||    
T  14046176 cctatataatagtttaagtgttaacctcattagatacaaagtccaaaatataaatttttagaaaacttgtaacttgaaacacaatatcatgaaagataa 14046274  T

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Target: chr6; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 140 - 228
Target Start/End: Original strand, 14106451 - 14106539
Alignment:
Q  140 tgaagattcacaagattttgccaacctatataatagtttaagtattaaccactttagatataaagtctaaaatataaaattttaaaaaa 228  Q
    ||||||| ||||  ||||||||| ||||||||||||||| ||| |||||||| ||||||||| ||||||||||||||| ||||||||||    
T  14106451 tgaagatgcacaccattttgccaccctatataatagtttgagtgttaaccaccttagatatatagtctaaaatataaatttttaaaaaa 14106539  T

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Target: chr6; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 164 - 262
Target Start/End: Complemental strand, 13474278 - 13474180
Alignment:
Q  164 cctatataatagtttaagtattaaccactttagatataaagtctaaaatataaaattttaaaaaagttgaaacttgaaatacaatatcatgaaagataa 262  Q
    ||||||||||||||||||| ||||   | |||||||||||||| |||||||||| |  || |||| ||| ||||||||| |||||||||||||||||||    
T  13474278 cctatataatagtttaagtgttaaggtcattagatataaagtccaaaatataaattcctagaaaacttgtaacttgaaacacaatatcatgaaagataa 13474180  T

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Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 172 - 216
Target Start/End: Original strand, 13910619 - 13910663
Alignment:
Q  172 atagtttaagtattaaccactttagatataaagtctaaaatataa 216  Q
    ||||||||||| |||||||||||||||||||||||||||||||||    
T  13910619 atagtttaagtgttaaccactttagatataaagtctaaaatataa 13910663  T

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Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 172 - 236
Target Start/End: Original strand, 14109243 - 14109307
Alignment:
Q  172 atagtttaagtattaaccactttagatataaagtctaaaatataaaattttaaaaaagttgaaac 236  Q
    ||||||||||| |||||| ||||| ||||||||||||||||||||| ||||| |||| |||||||    
T  14109243 atagtttaagtgttaacctctttatatataaagtctaaaatataaatttttagaaaacttgaaac 14109307  T

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Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 76
Target Start/End: Original strand, 14106330 - 14106399
Alignment:
Q  7 tcatcttcctagagttacaagggaaataattcacaaagccttcaataaagaggagaaactatttatcttc 76  Q
    |||||||||||||||||||| | |||||||||||||| | ||||  ||||||||||||| ||| ||||||    
T  14106330 tcatcttcctagagttacaatgaaaataattcacaaaacattcataaaagaggagaaaccattcatcttc 14106399  T

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Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 6 - 71
Target Start/End: Complemental strand, 13863840 - 13863775
Alignment:
Q  6 atcatcttcctagagttacaagggaaataattcacaaagccttcaataaagaggagaaactattta 71  Q
    |||||||| |||||||||||| | |||||||||||||| | ||||  ||||||||||||| |||||    
T  13863840 atcatcttactagagttacaatgcaaataattcacaaaacattcataaaagaggagaaaccattta 13863775  T

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Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 174 - 242
Target Start/End: Complemental strand, 13894274 - 13894205
Alignment:
Q  174 agtttaagtattaaccactttagat-ataaagtctaaaatataaaattttaaaaaagttgaaacttgaaa 242  Q
    ||||||| | ||||||||||||||| |||||||||||||||| || | | ||||| ||||||||||||||    
T  13894274 agtttaattcttaaccactttagattataaagtctaaaatatgaattataaaaaatgttgaaacttgaaa 13894205  T

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Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 164 - 228
Target Start/End: Original strand, 14083495 - 14083557
Alignment:
Q  164 cctatataatagtttaagtattaaccactttagatataaagtctaaaatataaaattttaaaaaa 228  Q
    ||||||||||||||||||| |||||| ||||||||||||  |||||||||| || ||||| ||||    
T  14083495 cctatataatagtttaagtgttaacctctttagatataa--tctaaaatattaatttttagaaaa 14083557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 262
Target Start/End: Original strand, 14021506 - 14021575
Alignment:
Q  193 ttagatataaagtctaaaatataaaattttaaaaaagttgaaacttgaaatacaatatcatgaaagataa 262  Q
    ||||||||||||||| ||||| ||| | ||| |||| ||| ||||||||| | |||||||| ||||||||    
T  14021506 ttagatataaagtctgaaatacaaattattagaaaacttgtaacttgaaacataatatcatcaaagataa 14021575  T

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