View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11386A_low_171 (Length: 308)

Name: NF11386A_low_171
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11386A_low_171
NF11386A_low_171
[»] chr3 (6 HSPs)
chr3 (37-308)||(45268809-45269077)
chr3 (58-100)||(5641613-5641655)
chr3 (66-100)||(48546202-48546236)
chr3 (66-100)||(53163623-53163657)
chr3 (68-100)||(8125668-8125700)
chr3 (64-100)||(29373454-29373490)
[»] scaffold1787 (1 HSPs)
scaffold1787 (57-100)||(429-472)
[»] chr7 (7 HSPs)
chr7 (57-100)||(14204301-14204344)
chr7 (37-100)||(21388552-21388615)
chr7 (37-100)||(47255060-47255123)
chr7 (66-100)||(21066915-21066949)
chr7 (63-100)||(27424868-27424905)
chr7 (68-100)||(15074911-15074943)
chr7 (58-94)||(25711158-25711194)
[»] chr5 (3 HSPs)
chr5 (37-100)||(39919071-39919134)
chr5 (66-100)||(12891586-12891620)
chr5 (66-100)||(26912862-26912896)
[»] chr4 (4 HSPs)
chr4 (57-100)||(15208551-15208594)
chr4 (54-100)||(19963811-19963857)
chr4 (66-100)||(33530822-33530856)
chr4 (67-100)||(42395256-42395289)
[»] chr2 (6 HSPs)
chr2 (37-100)||(38179223-38179286)
chr2 (58-100)||(1844846-1844888)
chr2 (47-97)||(20528163-20528213)
chr2 (66-100)||(44948625-44948659)
chr2 (66-98)||(32084873-32084905)
chr2 (58-94)||(32288408-32288444)
[»] chr1 (5 HSPs)
chr1 (57-100)||(14349673-14349716)
chr1 (66-100)||(33033155-33033189)
chr1 (66-100)||(42054362-42054396)
chr1 (57-98)||(35195637-35195678)
chr1 (66-94)||(24168614-24168642)
[»] chr8 (3 HSPs)
chr8 (54-100)||(13773387-13773433)
chr8 (63-100)||(43656065-43656102)
chr8 (57-101)||(14876600-14876644)
[»] chr6 (1 HSPs)
chr6 (67-100)||(14709028-14709061)


Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 37 - 308
Target Start/End: Original strand, 45268809 - 45269077
Alignment:
Q  37 ctcacacaatttaaatatgaagtgtacgaggttcgaaccccggtccctacatataatatgcaattcattagaaatcatttaatcacttttaatgtgactg 136  Q
    |||||| |||||||||||| |||| | ||||||||||||| |||| || |||||||||||||||||||| |||||||||||||||||||||||||||||     
T  45268809 ctcacataatttaaatatggagtgcatgaggttcgaaccc-ggtctctgcatataatatgcaattcattggaaatcatttaatcacttttaatgtgactt 45268907  T
Q  137 tcgattacttgttccaacttccaagaagccctgagctttggtttgcagaaaagagtagctaggctagtacaggctactcaagagtttacgaatcaatctc 236  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||    
T  45268908 tcgattacttgttccaacttccaagaagccctgagctttggtttgcagaaaagagtagctagggtagtacaggctacacaagagtttacgaatcaatctc 45269007  T
Q  237 aaatttcaaatgccaccacaaaataaaaaagagtacgtcacactcctcactcagtttccctaacatggaatg 308  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||| ||||||||    
T  45269008 aaatttcaaatgccaccacaaaataaaaaagagt--gtcacactcctcactcagtttccctaatatggaatg 45269077  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 100
Target Start/End: Original strand, 5641613 - 5641655
Alignment:
Q  58 gtgtacgaggttcgaaccccggtccctacatataatatgcaat 100  Q
    |||| ||||||||||||||||| |||| |||||||||||||||    
T  5641613 gtgtccgaggttcgaaccccggcccctgcatataatatgcaat 5641655  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 100
Target Start/End: Complemental strand, 48546236 - 48546202
Alignment:
Q  66 ggttcgaaccccggtccctacatataatatgcaat 100  Q
    ||||||||||||| |||||||||||||||||||||    
T  48546236 ggttcgaaccccgatccctacatataatatgcaat 48546202  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 100
Target Start/End: Complemental strand, 53163657 - 53163623
Alignment:
Q  66 ggttcgaaccccggtccctacatataatatgcaat 100  Q
    |||||||||||||| ||||||||||||||||||||    
T  53163657 ggttcgaaccccggcccctacatataatatgcaat 53163623  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 100
Target Start/End: Complemental strand, 8125700 - 8125668
Alignment:
Q  68 ttcgaaccccggtccctacatataatatgcaat 100  Q
    ||||||||||||||||| |||||||||||||||    
T  8125700 ttcgaaccccggtccctgcatataatatgcaat 8125668  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 100
Target Start/End: Original strand, 29373454 - 29373490
Alignment:
Q  64 gaggttcgaaccccggtccctacatataatatgcaat 100  Q
    |||||||||||||||| |||| |||||||||||||||    
T  29373454 gaggttcgaaccccggcccctgcatataatatgcaat 29373490  T

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Target: scaffold1787 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold1787
Description:

Target: scaffold1787; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 57 - 100
Target Start/End: Complemental strand, 472 - 429
Alignment:
Q  57 agtgtacgaggttcgaaccccggtccctacatataatatgcaat 100  Q
    ||||| ||||||||||||||||| |||| |||||||||||||||    
T  472 agtgtccgaggttcgaaccccggcccctgcatataatatgcaat 429  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 57 - 100
Target Start/End: Complemental strand, 14204344 - 14204301
Alignment:
Q  57 agtgtacgaggttcgaaccccggtccctacatataatatgcaat 100  Q
    ||||| ||||||||||||||| | ||||||||||||||||||||    
T  14204344 agtgtccgaggttcgaaccccagcccctacatataatatgcaat 14204301  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 37 - 100
Target Start/End: Complemental strand, 21388615 - 21388552
Alignment:
Q  37 ctcacacaatttaaatatgaagtgtacgaggttcgaaccccggtccctacatataatatgcaat 100  Q
    |||||||||||||| | || ||||| || ||||||||||||||  ||| |||||||||||||||    
T  21388615 ctcacacaatttaattgtggagtgtccggggttcgaaccccggctcctgcatataatatgcaat 21388552  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 37 - 100
Target Start/End: Original strand, 47255060 - 47255123
Alignment:
Q  37 ctcacacaatttaaatatgaagtgtacgaggttcgaaccccggtccctacatataatatgcaat 100  Q
    |||||||||||||| | |||||||| || ||||||||||||||  ||| || ||||||||||||    
T  47255060 ctcacacaatttaattgtgaagtgtccggggttcgaaccccggctcctgcagataatatgcaat 47255123  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 100
Target Start/End: Complemental strand, 21066949 - 21066915
Alignment:
Q  66 ggttcgaaccccggtccctacatataatatgcaat 100  Q
    |||||||||||||| ||||||||||||||||||||    
T  21066949 ggttcgaaccccggcccctacatataatatgcaat 21066915  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 100
Target Start/End: Complemental strand, 27424905 - 27424868
Alignment:
Q  63 cgaggttcgaaccccggtccctacatataatatgcaat 100  Q
    ||||||||||||||||| |||| |||||||||||||||    
T  27424905 cgaggttcgaaccccggcccctgcatataatatgcaat 27424868  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 100
Target Start/End: Original strand, 15074911 - 15074943
Alignment:
Q  68 ttcgaaccccggtccctacatataatatgcaat 100  Q
    ||||||||||||||||| |||||||||||||||    
T  15074911 ttcgaaccccggtccctgcatataatatgcaat 15074943  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 94
Target Start/End: Original strand, 25711158 - 25711194
Alignment:
Q  58 gtgtacgaggttcgaaccccggtccctacatataata 94  Q
    |||| ||||||||||||||||| ||||||||||||||    
T  25711158 gtgtccgaggttcgaaccccggcccctacatataata 25711194  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 37 - 100
Target Start/End: Original strand, 39919071 - 39919134
Alignment:
Q  37 ctcacacaatttaaatatgaagtgtacgaggttcgaaccccggtccctacatataatatgcaat 100  Q
    |||||||||||||| | || ||||| || ||||||||||||||  ||| |||||||||||||||    
T  39919071 ctcacacaatttaattgtggagtgtccggggttcgaaccccggctcctgcatataatatgcaat 39919134  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 100
Target Start/End: Complemental strand, 12891620 - 12891586
Alignment:
Q  66 ggttcgaaccccggtccctacatataatatgcaat 100  Q
    |||||||||||||| ||||||||||||||||||||    
T  12891620 ggttcgaaccccggcccctacatataatatgcaat 12891586  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 100
Target Start/End: Complemental strand, 26912896 - 26912862
Alignment:
Q  66 ggttcgaaccccggtccctacatataatatgcaat 100  Q
    |||||||||||||| ||||||||||||||||||||    
T  26912896 ggttcgaaccccggcccctacatataatatgcaat 26912862  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 57 - 100
Target Start/End: Complemental strand, 15208594 - 15208551
Alignment:
Q  57 agtgtacgaggttcgaaccccggtccctacatataatatgcaat 100  Q
    ||||| |||||||||||||||||| |||| ||||||||||||||    
T  15208594 agtgtccgaggttcgaaccccggttcctatatataatatgcaat 15208551  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 100
Target Start/End: Complemental strand, 19963857 - 19963811
Alignment:
Q  54 tgaagtgtacgaggttcgaaccccggtccctacatataatatgcaat 100  Q
    |||||||| ||||||||||||||||  |||| |||||||||||||||    
T  19963857 tgaagtgtccgaggttcgaaccccgacccctgcatataatatgcaat 19963811  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 100
Target Start/End: Complemental strand, 33530856 - 33530822
Alignment:
Q  66 ggttcgaaccccggtccctacatataatatgcaat 100  Q
    ||||||||||||| |||||||||||||||||||||    
T  33530856 ggttcgaaccccgatccctacatataatatgcaat 33530822  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 100
Target Start/End: Complemental strand, 42395289 - 42395256
Alignment:
Q  67 gttcgaaccccggtccctacatataatatgcaat 100  Q
    ||||||||||||| ||||||||||||||||||||    
T  42395289 gttcgaaccccggcccctacatataatatgcaat 42395256  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 37 - 100
Target Start/End: Original strand, 38179223 - 38179286
Alignment:
Q  37 ctcacacaatttaaatatgaagtgtacgaggttcgaaccccggtccctacatataatatgcaat 100  Q
    |||||||||||||| | || ||||| ||||||||||||||| | |||| ||||||| |||||||    
T  38179223 ctcacacaatttaattgtggagtgtccgaggttcgaaccccagcccctgcatataaaatgcaat 38179286  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 100
Target Start/End: Complemental strand, 1844888 - 1844846
Alignment:
Q  58 gtgtacgaggttcgaaccccggtccctacatataatatgcaat 100  Q
    |||| ||||||||||||||||| |||| |||||||||||||||    
T  1844888 gtgtccgaggttcgaaccccggcccctgcatataatatgcaat 1844846  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 97
Target Start/End: Original strand, 20528163 - 20528213
Alignment:
Q  47 ttaaatatgaagtgtacgaggttcgaaccccggtccctacatataatatgc 97  Q
    |||||| ||||||||  |||||||||||||| |||||||||||||| ||||    
T  20528163 ttaaatgtgaagtgtctgaggttcgaaccccagtccctacatataacatgc 20528213  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 100
Target Start/End: Complemental strand, 44948659 - 44948625
Alignment:
Q  66 ggttcgaaccccggtccctacatataatatgcaat 100  Q
    ||||||||||||||||||| |||||||||||||||    
T  44948659 ggttcgaaccccggtccctgcatataatatgcaat 44948625  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 98
Target Start/End: Complemental strand, 32084905 - 32084873
Alignment:
Q  66 ggttcgaaccccggtccctacatataatatgca 98  Q
    |||||||||||||| ||||||||||||||||||    
T  32084905 ggttcgaaccccggcccctacatataatatgca 32084873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 94
Target Start/End: Complemental strand, 32288444 - 32288408
Alignment:
Q  58 gtgtacgaggttcgaaccccggtccctacatataata 94  Q
    |||| |||||||||||||||| |||||||||||||||    
T  32288444 gtgtccgaggttcgaaccccgatccctacatataata 32288408  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 57 - 100
Target Start/End: Complemental strand, 14349716 - 14349673
Alignment:
Q  57 agtgtacgaggttcgaaccccggtccctacatataatatgcaat 100  Q
    ||||| || ||||||||||||| |||||||||||||||||||||    
T  14349716 agtgtccggggttcgaaccccgatccctacatataatatgcaat 14349673  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 100
Target Start/End: Complemental strand, 33033189 - 33033155
Alignment:
Q  66 ggttcgaaccccggtccctacatataatatgcaat 100  Q
    ||||||||||||||||||| |||||||||||||||    
T  33033189 ggttcgaaccccggtccctgcatataatatgcaat 33033155  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 100
Target Start/End: Complemental strand, 42054396 - 42054362
Alignment:
Q  66 ggttcgaaccccggtccctacatataatatgcaat 100  Q
    |||||||||||||| ||||||||||||||||||||    
T  42054396 ggttcgaaccccggcccctacatataatatgcaat 42054362  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 98
Target Start/End: Original strand, 35195637 - 35195678
Alignment:
Q  57 agtgtacgaggttcgaaccccggtccctacatataatatgca 98  Q
    |||||||| ||||||||||| ||||||| |||||||||||||    
T  35195637 agtgtacggggttcgaaccctggtccctgcatataatatgca 35195678  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 94
Target Start/End: Original strand, 24168614 - 24168642
Alignment:
Q  66 ggttcgaaccccggtccctacatataata 94  Q
    |||||||||||||||||||||||||||||    
T  24168614 ggttcgaaccccggtccctacatataata 24168642  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 100
Target Start/End: Original strand, 13773387 - 13773433
Alignment:
Q  54 tgaagtgtacgaggttcgaaccccggtccctacatataatatgcaat 100  Q
    |||||||| || ||||||||||||||  |||||||||||||||||||    
T  13773387 tgaagtgtccggggttcgaaccccggctcctacatataatatgcaat 13773433  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 100
Target Start/End: Complemental strand, 43656102 - 43656065
Alignment:
Q  63 cgaggttcgaaccccggtccctacatataatatgcaat 100  Q
    ||||||||||||||||  ||||||||||||||||||||    
T  43656102 cgaggttcgaaccccgacccctacatataatatgcaat 43656065  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 101
Target Start/End: Original strand, 14876600 - 14876644
Alignment:
Q  57 agtgtacgaggttcgaaccccggtccctacatataatatgcaatt 101  Q
    ||||| |||||||||||||||||  ||| ||||||||||||||||    
T  14876600 agtgtccgaggttcgaaccccggctcctgcatataatatgcaatt 14876644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 100
Target Start/End: Original strand, 14709028 - 14709061
Alignment:
Q  67 gttcgaaccccggtccctacatataatatgcaat 100  Q
    ||||||||||||| ||||||||||||||||||||    
T  14709028 gttcgaaccccggcccctacatataatatgcaat 14709061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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