View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11386A_low_175 (Length: 307)
Name: NF11386A_low_175
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386A_low_175 |
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Alignment Details
Target: chr7 (Bit Score: 250; Significance: 1e-139; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 16 - 288
Target Start/End: Original strand, 48016750 - 48017023
Alignment:
| Q |
16 |
ctatgtatcgtatgctatatttcctgatttacatgtaaatatttacaggtatacatggttgactatgaccttggggaaaaatatcacgatcttcacacac |
115 |
Q |
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| T |
48016750 |
ctatgtatcgtatgctatatttcctgatttacatgtaaatgtttacaggtatacatggttgaccatgaccttggggaaaaatatcacgatcttcacacac |
48016849 |
T |
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| Q |
116 |
aggagcatatacaatacatgtatctaacatataattttaattttgaccatggaacaaacttgtaatggatcaatccgatccattttttaaatttgctatg |
215 |
Q |
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| T |
48016850 |
aggagcatatacaatacatgtatctaacatataattttaattttgaccatggaacaaacttgtactggatcaatccgatccattttttaaatttgctatg |
48016949 |
T |
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| Q |
216 |
acgaggtcttggtggaacaatcagcagcaggctaatttgaatctcttatactatta-ttatttggagcaaaaat |
288 |
Q |
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| T |
48016950 |
acgatgtcttggtggaacaatcagcagcaggctaatttgaatctcttatactattatttatttggagcaaaaat |
48017023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 58 - 153
Target Start/End: Original strand, 48012274 - 48012370
Alignment:
| Q |
58 |
ttacaggtatacatggttgactatgaccttggggaaaaatatcacgatcttc-acacacaggagcatatacaatacatgtatctaacatataatttt |
153 |
Q |
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| T |
48012274 |
ttacagatataaatgattgaccacgaccttgggaaaaattatcacaatcttccactcacgtaagcatatacaatacatgtatctaacatataatttt |
48012370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 119 - 153
Target Start/End: Original strand, 48012697 - 48012731
Alignment:
| Q |
119 |
agcatatacaatacatgtatctaacatataatttt |
153 |
Q |
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| T |
48012697 |
agcatatacaatacatgtatctaacatataatttt |
48012731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 131
Target Start/End: Complemental strand, 1414431 - 1414375
Alignment:
| Q |
75 |
tgactatgaccttggggaaaaatatcacgatcttcacacacaggagcatatacaata |
131 |
Q |
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| T |
1414431 |
tgactatggccttggggaaaagtatcacgaacttcacacacattagcatataaaata |
1414375 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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