View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11386A_low_179 (Length: 301)

Name: NF11386A_low_179
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11386A_low_179
NF11386A_low_179
[»] chr2 (5 HSPs)
chr2 (118-295)||(1504046-1504223)
chr2 (118-295)||(1507248-1507425)
chr2 (132-295)||(45493806-45493962)
chr2 (132-295)||(45501548-45501704)
chr2 (211-247)||(20066685-20066721)
[»] chr4 (4 HSPs)
chr4 (118-294)||(11703241-11703417)
chr4 (118-295)||(11706312-11706489)
chr4 (117-202)||(37176334-37176418)
chr4 (132-200)||(18859044-18859111)
[»] chr3 (2 HSPs)
chr3 (117-295)||(42355064-42355242)
chr3 (117-202)||(31857146-31857231)
[»] chr7 (7 HSPs)
chr7 (118-295)||(22256549-22256725)
chr7 (118-295)||(22233287-22233463)
chr7 (118-295)||(22253276-22253452)
chr7 (177-295)||(37415976-37416094)
chr7 (177-295)||(37423508-37423626)
chr7 (132-202)||(13450587-13450657)
chr7 (132-202)||(8397078-8397148)
[»] chr5 (6 HSPs)
chr5 (117-170)||(40885561-40885613)
chr5 (132-200)||(26547356-26547423)
chr5 (132-200)||(26550915-26550982)
chr5 (132-194)||(40800555-40800616)
chr5 (203-243)||(19678540-19678580)
chr5 (203-243)||(19688922-19688962)
[»] chr6 (1 HSPs)
chr6 (132-200)||(31262001-31262068)


Alignment Details
Target: chr2 (Bit Score: 178; Significance: 5e-96; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 118 - 295
Target Start/End: Complemental strand, 1504223 - 1504046
Alignment:
Q  118 aataaagtatggtatttttggtctattgagtcaagcaagcaaatgattggaattaataggttattatcattattattggttatatttatataatcaaaga 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1504223 aataaagtatggtatttttggtctattgagtcaagcaagcaaatgattggaattaataggttattatcattattattggttatatttatataatcaaaga 1504124  T
Q  218 agagaaaaacaagaggtgacaaaaagcaacatattaattgatgggcttataggagaaaacgtacaggaacaaggaaag 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1504123 agagaaaaacaagaggtgacaaaaagcaacatattaattgatgggcttataggagaaaacgtacaggaacaaggaaag 1504046  T

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Target: chr2; HSP #2
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 118 - 295
Target Start/End: Complemental strand, 1507425 - 1507248
Alignment:
Q  118 aataaagtatggtatttttggtctattgagtcaagcaagcaaatgattggaattaataggttattatcattattattggttatatttatataatcaaaga 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1507425 aataaagtatggtatttttggtctattgagtcaagcaagcaaatgattggaattaataggttattatcattattattggttatatttatataatcaaaga 1507326  T
Q  218 agagaaaaacaagaggtgacaaaaagcaacatattaattgatgggcttataggagaaaacgtacaggaacaaggaaag 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1507325 agagaaaaacaagaggtgacaaaaagcaacatattaattgatgggcttataggagaaaacgtacaggaacaaggaaag 1507248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 132 - 295
Target Start/End: Complemental strand, 45493962 - 45493806
Alignment:
Q  132 tttttggtctattgagtcaagcaagcaaatgattggaattaataggttattatcattattattggttatatttatataatcaaagaagagaaaaacaaga 231  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||  |||||       ||| ||||||||||||||||| |||| ||||    
T  45493962 tttttggtctattgagtcaagcaagcaaatgattggaattaatgggttattatcagcattat-------attaatataatcaaagaagagcaaaagaaga 45493870  T
Q  232 ggtgacaaaaagcaacatattaattgatgggcttataggagaaaacgtacaggaacaaggaaag 295  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  45493869 ggtgacaaaaagcaacatattaattgatgggcttataggagaaaacgtacagaaacaaggaaag 45493806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 132 - 295
Target Start/End: Complemental strand, 45501704 - 45501548
Alignment:
Q  132 tttttggtctattgagtcaagcaagcaaatgattggaattaataggttattatcattattattggttatatttatataatcaaagaagagaaaaacaaga 231  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||  |||||       ||| ||||||||||||||||| |||| ||||    
T  45501704 tttttggtctattgagtcaagcaagcaaatgattggaattaatgggttattatcagcattat-------attaatataatcaaagaagagcaaaagaaga 45501612  T
Q  232 ggtgacaaaaagcaacatattaattgatgggcttataggagaaaacgtacaggaacaaggaaag 295  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  45501611 ggtgacaaaaagcaacatattaattgatgggcttataggagaaaacgtacagaaacaaggaaag 45501548  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 247
Target Start/End: Original strand, 20066685 - 20066721
Alignment:
Q  211 tcaaagaagagaaaaacaagaggtgacaaaaagcaac 247  Q
    ||||||||||| |||||||||||||||||||||||||    
T  20066685 tcaaagaagagcaaaacaagaggtgacaaaaagcaac 20066721  T

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Target: chr4 (Bit Score: 177; Significance: 2e-95; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 118 - 294
Target Start/End: Complemental strand, 11703417 - 11703241
Alignment:
Q  118 aataaagtatggtatttttggtctattgagtcaagcaagcaaatgattggaattaataggttattatcattattattggttatatttatataatcaaaga 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11703417 aataaagtatggtatttttggtctattgagtcaagcaagcaaatgattggaattaataggttattatcattattattggttatatttatataatcaaaga 11703318  T
Q  218 agagaaaaacaagaggtgacaaaaagcaacatattaattgatgggcttataggagaaaacgtacaggaacaaggaaa 294  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11703317 agagaaaaacaagaggtgacaaaaagcaacatattaattgatgggcttataggagaaaacgtacaggaacaaggaaa 11703241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 118 - 295
Target Start/End: Complemental strand, 11706489 - 11706312
Alignment:
Q  118 aataaagtatggtatttttggtctattgagtcaagcaagcaaatgattggaattaataggttattatcattattattggttatatttatataatcaaaga 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11706489 aataaagtatggtatttttggtctattgagtcaagcaagcaaatgattggaattaataggttattatcattattattggttatatttatataatcaaaga 11706390  T
Q  218 agagaaaaacaagaggtgacaaaaagcaacatattaattgatgggcttataggagaaaacgtacaggaacaaggaaag 295  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11706389 agagaaaaacaagagatgacaaaaagcaacatattaattgatgggcttataggagaaaacgtacaggaacaaggaaag 11706312  T

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Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 117 - 202
Target Start/End: Original strand, 37176334 - 37176418
Alignment:
Q  117 gaataaagtatggtatttttggtctattgagtcaagcaagcaaatgattggaattaataggttattatcattattattggttatat 202  Q
    ||||||||||| || |||||||| |||||||| ||||||| |||| |||| ||||||| |||||||||||| ||||||||||||||    
T  37176334 gaataaagtattgt-tttttggtttattgagtgaagcaaggaaattattgaaattaatgggttattatcatgattattggttatat 37176418  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 200
Target Start/End: Original strand, 18859044 - 18859111
Alignment:
Q  132 tttttggtctattgagtcaagcaagcaaatgattggaattaataggttattatcattattattggttat 200  Q
    ||||||||||||| ||||||||||  |||| ||||||||| || |||||||||||| |||||| |||||    
T  18859044 tttttggtctattaagtcaagcaaagaaat-attggaatttatgggttattatcatgattatttgttat 18859111  T

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Target: chr3 (Bit Score: 171; Significance: 7e-92; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 117 - 295
Target Start/End: Complemental strand, 42355242 - 42355064
Alignment:
Q  117 gaataaagtatggtatttttggtctattgagtcaagcaagcaaatgattggaattaataggttattatcattattattggttatatttatataatcaaag 216  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  42355242 gaataaagtatgatatttttggtctattgagtcaagcaagcaaatgattggaattaataggttattataattattattggttatatttatataatcaaag 42355143  T
Q  217 aagagaaaaacaagaggtgacaaaaagcaacatattaattgatgggcttataggagaaaacgtacaggaacaaggaaag 295  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42355142 aagagaaaaacaagaggtgacaaaaagcaacatattaattgatgggcttataggagaaaacgtacaggaacaaggaaag 42355064  T

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Target: chr3; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 117 - 202
Target Start/End: Original strand, 31857146 - 31857231
Alignment:
Q  117 gaataaagtatggtatttttggtctattgagtcaagcaagcaaatgattggaattaataggttattatcattattattggttatat 202  Q
    ||||||||||| || ||||||||||||||||||||||||| ||||||||||||||  | |||||||||||| ||||||| ||||||    
T  31857146 gaataaagtattgtttttttggtctattgagtcaagcaaggaaatgattggaattgctgggttattatcatgattattgattatat 31857231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 170; Significance: 3e-91; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 118 - 295
Target Start/End: Original strand, 22256549 - 22256725
Alignment:
Q  118 aataaagtatggtatttttggtctattgagtcaagcaagcaaatgattggaattaataggttattatcattattattggttatatttatataatcaaaga 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22256549 aataaagtatggtatttttggtctattgagtcaagcaagcaaatgattggaattaataggttattatcattattattggttatatttatataatcaaaga 22256648  T
Q  218 agagaaaaacaagaggtgacaaaaagcaacatattaattgatgggcttataggagaaaacgtacaggaacaaggaaag 295  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22256649 agagaaaaacaagaggtgac-aaaagcaacatattaattgatgggcttataggagaaaacgtacaggaacaaggaaag 22256725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 118 - 295
Target Start/End: Complemental strand, 22233463 - 22233287
Alignment:
Q  118 aataaagtatggtatttttggtctattgagtcaagcaagcaaatgattggaattaataggttattatcattattattggttatatttatataatcaaaga 217  Q
    ||||||||||||||||||||| |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22233463 aataaagtatggtatttttggacctttgagtcaagcaagcaaatgattggaattaataggttattatcattattattggttatatttatataatcaaaga 22233364  T
Q  218 agagaaaaacaagaggtgacaaaaagcaacatattaattgatgggcttataggagaaaacgtacaggaacaaggaaag 295  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22233363 agagaaaaacaagaggtgac-aaaagcaacatattaattgatgggcttataggagaaaacgtacaggaacaaggaaag 22233287  T

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Target: chr7; HSP #3
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 118 - 295
Target Start/End: Original strand, 22253276 - 22253452
Alignment:
Q  118 aataaagtatggtatttttggtctattgagtcaagcaagcaaatgattggaattaataggttattatcattattattggttatatttatataatcaaaga 217  Q
    ||||||||||||||||||||| |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22253276 aataaagtatggtatttttggacctttgagtcaagcaagcaaatgattggaattaataggttattatcattattattggttatatttatataatcaaaga 22253375  T
Q  218 agagaaaaacaagaggtgacaaaaagcaacatattaattgatgggcttataggagaaaacgtacaggaacaaggaaag 295  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22253376 agagaaaaacaagaggtgac-aaaagcaacatattaattgatgggcttataggagaaaacgtacaggaacaaggaaag 22253452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 177 - 295
Target Start/End: Complemental strand, 37416094 - 37415976
Alignment:
Q  177 gttattatcattattattggttatatttatataatcaaagaagagaaaaacaagaggtgacaaaaagcaacatattaattgatgggcttataggagaaaa 276  Q
    |||||||||| |||||||||||||||| ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  37416094 gttattatcagtattattggttatattaatataatcaaagaagagcaaaagaagaggtgacaaaaagcaacatattaattgatgggcttataggagaaaa 37415995  T
Q  277 cgtacaggaacaaggaaag 295  Q
    |||||||||||||||||||    
T  37415994 cgtacaggaacaaggaaag 37415976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 177 - 295
Target Start/End: Complemental strand, 37423626 - 37423508
Alignment:
Q  177 gttattatcattattattggttatatttatataatcaaagaagagaaaaacaagaggtgacaaaaagcaacatattaattgatgggcttataggagaaaa 276  Q
    |||||||||| |||||||||||||||| ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  37423626 gttattatcagtattattggttatattaatataatcaaagaagagcaaaagaagaggtgacaaaaagcaacatattaattgatgggcttataggagaaaa 37423527  T
Q  277 cgtacaggaacaaggaaag 295  Q
    |||||||||||||||||||    
T  37423526 cgtacaggaacaaggaaag 37423508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 132 - 202
Target Start/End: Complemental strand, 13450657 - 13450587
Alignment:
Q  132 tttttggtctattgagtcaagcaagcaaatgattggaattaataggttattatcattattattggttatat 202  Q
    ||||||||||||||||||||||||| |||||||||||||| || |||||||||||| ||||||||||||||    
T  13450657 tttttggtctattgagtcaagcaaggaaatgattggaattgatgggttattatcatgattattggttatat 13450587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 132 - 202
Target Start/End: Original strand, 8397078 - 8397148
Alignment:
Q  132 tttttggtctattgagtcaagcaagcaaatgattggaattaataggttattatcattattattggttatat 202  Q
    |||||||| |||||||| ||||||| |||  |||| ||||||| |||||||||||| ||||||||||||||    
T  8397078 tttttggtttattgagtaaagcaaggaaactattgaaattaatgggttattatcatgattattggttatat 8397148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 117 - 170
Target Start/End: Complemental strand, 40885613 - 40885561
Alignment:
Q  117 gaataaagtatggtatttttggtctattgagtcaagcaagcaaatgattggaat 170  Q
    ||||||||||| || ||||||||||||||||||||||||| |||||||||||||    
T  40885613 gaataaagtattgt-tttttggtctattgagtcaagcaaggaaatgattggaat 40885561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 132 - 200
Target Start/End: Original strand, 26547356 - 26547423
Alignment:
Q  132 tttttggtctattgagtcaagcaagcaaatgattggaattaataggttattatcattattattggttat 200  Q
    ||||||||||||| ||||||||||| |||| ||||||||| || |||||||||||| |||||| |||||    
T  26547356 tttttggtctattaagtcaagcaaggaaat-attggaatttatgggttattatcataattatttgttat 26547423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 132 - 200
Target Start/End: Original strand, 26550915 - 26550982
Alignment:
Q  132 tttttggtctattgagtcaagcaagcaaatgattggaattaataggttattatcattattattggttat 200  Q
    ||||||||||||| ||||||||||| |||| ||||||||| || |||||||||||| |||||| |||||    
T  26550915 tttttggtctattaagtcaagcaaggaaat-attggaatttatgggttattatcataattatttgttat 26550982  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 132 - 194
Target Start/End: Complemental strand, 40800616 - 40800555
Alignment:
Q  132 tttttggtctattgagtcaagcaagcaaatgattggaattaataggttattatcattattatt 194  Q
    ||||||||||||| ||||||||||| |||| ||||||||| || |||||||||||| ||||||    
T  40800616 tttttggtctattaagtcaagcaaggaaat-attggaatttatgggttattatcataattatt 40800555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 243
Target Start/End: Original strand, 19678540 - 19678580
Alignment:
Q  203 ttatataatcaaagaagagaaaaacaagaggtgacaaaaag 243  Q
    ||||||||| ||||||||| ||||||||| |||||||||||    
T  19678540 ttatataataaaagaagagcaaaacaagatgtgacaaaaag 19678580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 243
Target Start/End: Original strand, 19688922 - 19688962
Alignment:
Q  203 ttatataatcaaagaagagaaaaacaagaggtgacaaaaag 243  Q
    ||||||||| ||||||||| ||||||||| |||||||||||    
T  19688922 ttatataataaaagaagagcaaaacaagatgtgacaaaaag 19688962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 132 - 200
Target Start/End: Original strand, 31262001 - 31262068
Alignment:
Q  132 tttttggtctattgagtcaagcaagcaaatgattggaattaataggttattatcattattattggttat 200  Q
    ||||| ||||||| ||||||||||| |||| |||| ||||||| |||||||||||| ||||||||||||    
T  31262001 ttttttgtctattaagtcaagcaagaaaat-attgaaattaatgggttattatcatgattattggttat 31262068  T

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