View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11386A_low_18 (Length: 465)
Name: NF11386A_low_18
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386A_low_18 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 396; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 16 - 465
Target Start/End: Complemental strand, 53331244 - 53330796
Alignment:
| Q |
16 |
attcaactctgcaaaatgtacggtggctgccacacagaaatatctccttaatcnnnnnnnnnngacagtccaacattcattcatatcaaagaaagaaggt |
115 |
Q |
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| T |
53331244 |
attcaactctgcaaattgtacg-tggctgccacacagaaatatctccttactcttttttttttgacagtccaacattcattcatatcaaagaaagaaggt |
53331146 |
T |
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| Q |
116 |
tgatatatacagcagcagcttagcgccaagaacaggatcccaactagattatgagctacaccattacatcttttaatgaacataacactacaattaacaa |
215 |
Q |
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| T |
53331145 |
tgatatatacagcagcagcttagcgccaagaacaggatcccaactagattatgagctacaccattacatcttttaatgaacataacactacaattaacaa |
53331046 |
T |
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| Q |
216 |
tttcagacagaatgtccttacagtcaagtaaaatattatcaatttcagacagcttagcgccacctttcaagcactttacaataatttcagcatctgtttc |
315 |
Q |
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| T |
53331045 |
tttcagacataatgtccttacagtcaagtaaaatattatcaatttcagacagcttagtgccacctttcaagcactttacaataatttcagcatctgtttc |
53330946 |
T |
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| Q |
316 |
cttcaagaaatggccattctgatctgaagataggatccattgaagccccaccgcagcgctattatttcagccatagtaagagacactcggatattgtcta |
415 |
Q |
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| T |
53330945 |
cttcaagaaatggccattctgatctgaagataggatccattgaagccccaccgcagcgctattatttcagccatagtaagagacactcggatattgtcta |
53330846 |
T |
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| Q |
416 |
actttgttgcagcaaacttgacattccctccattgtctctaaccaccatt |
465 |
Q |
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| T |
53330845 |
actttgttgcagcaaacttgacattccctccattgtctctaaccaccatt |
53330796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 412 - 444
Target Start/End: Complemental strand, 39582846 - 39582814
Alignment:
| Q |
412 |
tctaactttgttgcagcaaacttgacattccct |
444 |
Q |
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| T |
39582846 |
tctagctttgttgcagcaaacttgacattccct |
39582814 |
T |
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