View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11386A_low_184 (Length: 295)
Name: NF11386A_low_184
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386A_low_184 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 3424321 - 3424604
Alignment:
| Q |
1 |
caaagaagctagaagctataagaatggcagcagcactcttcaacaaattggattcaatacttaatgagcttcaaaatgtgaatatagttacaccagtgac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3424321 |
caaagaagctagaagctataagaatggcagcagcactgttcaacaaattggattcaatacttaatgagcttcaaaatgtgaatatagttacaccagtgac |
3424420 |
T |
|
| Q |
101 |
tcaagtccttgacaagattgaacgttatttcaataaggtgatacaaaatcccttcatattaatgtataaattcatttaatcattgttactaaatcaacaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3424421 |
tcaagtccttgacaagattgaacgttatttcaataaggtgatacaaaatcccttcatattaatgtataaattcatttaatcattgttactaaatcaacaa |
3424520 |
T |
|
| Q |
201 |
gatcaaacaaacagatcaaaacagaattagatgctttggagcgaacgaaagatgaagaatcgaagaaatttaagggccataaca |
284 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
3424521 |
gatcaaacaaacagatcaaaacagaattagatgctttggagcgaacgaaagatgaagaattgaagaaatttaagggccataaca |
3424604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 183; Significance: 5e-99; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 11917090 - 11916810
Alignment:
| Q |
1 |
caaagaagctagaagctataagaatggcagcagcactcttcaacaaattggattcaatacttaatgagcttcaaaatgtgaatatagttacaccagtgac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
11917090 |
caaagaagctagaagctataagaatggcagcagcactcttcaacaaactggattcaatacttaatgagcttcaaaatgtgaatatagttacaccagttac |
11916991 |
T |
|
| Q |
101 |
tcaagtccttgacaagattgaacgttatttcaataaggtgatacaaaatcccttcatat----------taatgtataaattcatttaatcattgttact |
190 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
11916990 |
tcaagtccttgacaagattgaacgttatttcaataaggtgatacaaaagtccttcatattaatatatgctaatgcataaattcatttaatcattgttact |
11916891 |
T |
|
| Q |
191 |
aaatcaacaagatcaaacaaacagatcaaaacagaattagatgctttggagcgaacgaaagatgaagaatcgaagaaatttaagggccataaca |
284 |
Q |
| |
|
|| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |
|
|
| T |
11916890 |
aactcaaca-------------agatcaaaacagaattagatgctttggagcgaacgaaagatgaagaagctaagaaatttaagggccataaca |
11916810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 202 - 279
Target Start/End: Complemental strand, 6082025 - 6081948
Alignment:
| Q |
202 |
atcaaacaaacagatcaaaacagaattagatgctttggagcgaacgaaagatgaagaatcgaagaaatttaagggcca |
279 |
Q |
| |
|
|||||||||| ||||||||| |||||||||| ||||||| | |||||| |||||||||| ||||||||||||||||| |
|
|
| T |
6082025 |
atcaaacaaagagatcaaaagagaattagatagtttggagtggacgaaaaatgaagaatcaaagaaatttaagggcca |
6081948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University