View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11386A_low_188 (Length: 294)

Name: NF11386A_low_188
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11386A_low_188
NF11386A_low_188
[»] chr6 (27 HSPs)
chr6 (21-286)||(5688749-5689020)
chr6 (21-286)||(5177917-5178177)
chr6 (21-286)||(5279742-5280008)
chr6 (161-271)||(5242504-5242614)
chr6 (137-286)||(5126597-5126746)
chr6 (59-286)||(5065338-5065566)
chr6 (161-270)||(5427094-5427203)
chr6 (166-286)||(5346207-5346327)
chr6 (169-284)||(5398226-5398341)
chr6 (168-286)||(5180773-5180891)
chr6 (163-267)||(5100812-5100916)
chr6 (163-267)||(5135913-5136017)
chr6 (163-286)||(5156007-5156130)
chr6 (163-286)||(5372275-5372398)
chr6 (152-286)||(5098389-5098523)
chr6 (165-266)||(23127306-23127407)
chr6 (163-286)||(5351578-5351701)
chr6 (161-286)||(5352855-5352980)
chr6 (163-285)||(2939094-2939216)
chr6 (161-286)||(5072674-5072799)
chr6 (168-273)||(5283223-5283328)
chr6 (168-262)||(5439213-5439307)
chr6 (170-279)||(5253718-5253827)
chr6 (194-286)||(5334363-5334455)
chr6 (165-279)||(5124439-5124553)
chr6 (168-273)||(5256113-5256218)
chr6 (168-279)||(5448794-5448905)
[»] chr4 (7 HSPs)
chr4 (140-272)||(4122615-4122747)
chr4 (90-268)||(25569036-25569217)
chr4 (128-273)||(4132577-4132719)
chr4 (163-273)||(4319296-4319406)
chr4 (161-207)||(7884147-7884193)
chr4 (161-206)||(4346621-4346666)
chr4 (161-206)||(4362810-4362855)
[»] chr3 (4 HSPs)
chr3 (169-287)||(47985393-47985511)
chr3 (169-287)||(48003967-48004085)
chr3 (169-287)||(47994680-47994798)
chr3 (169-287)||(48013252-48013370)
[»] chr7 (1 HSPs)
chr7 (161-286)||(36212913-36213038)
[»] scaffold0294 (1 HSPs)
scaffold0294 (170-266)||(7878-7974)


Alignment Details
Target: chr6 (Bit Score: 232; Significance: 1e-128; HSPs: 27)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 21 - 286
Target Start/End: Original strand, 5688749 - 5689020
Alignment:
Q  21 tcattttcatcaccactacta---acaatgacatggtaatcttgtgcattagaagagacctctcttaatagcattcatcttcatcaccacta---cacac 114  Q
    |||||||||||||||||||||   |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||    
T  5688749 tcattttcatcaccactactaccaacaatgacattgtaatcttgtgcattagaagagacctctcttaatagcattcatcttcatcaccactactacacac 5688848  T
Q  115 aatatcattttcttcttgttcttgacattgctccatattttcacggattggttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttg 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  5688849 aatatcattttcttcttgttcttgacattgctccatattttcacgaattggttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttc 5688948  T
Q  215 tcaaaaacagaaacaacctccactttgttacaaggttctatacttgatactactctctgtccctcttcatct 286  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5688949 tcaaaaacagaaacaacctccactttgttacaaggttctatacttgatactactctctgtccctcttcatct 5689020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 21 - 286
Target Start/End: Complemental strand, 5178177 - 5177917
Alignment:
Q  21 tcattttcatcaccactactaacaatgacatggtaatcttgtgcattagaagagacctctctta-atagcattcatcttcatcaccactacacacaatat 119  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| | | |||||||||||||||||||||||||||||||      
T  5178177 tcattttcatcaccactactaacaatgacattgtaatcttgtgcattagaagagacttctctgacaaagcattcatcttcatcaccactacacacaat-- 5178080  T
Q  120 cattttcttcttgttcttgacattgctccatattttcacggattggttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaa 219  Q
        ||||||||||||||| ||||||||||| ||||| |  ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  5178079 ----ttcttcttgttcttggcattgctccattttttctccaattggttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttctcaaa 5177984  T
Q  220 aacagaaacaacctccactttgttacaaggttctatacttgatactactctctgtccctcttcatct 286  Q
    ||||  |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  5177983 aacaacaacaacctccactttgttacaaggttctatacttgatactactctctgaccctcttcatct 5177917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 21 - 286
Target Start/End: Complemental strand, 5280008 - 5279742
Alignment:
Q  21 tcattttcatcaccactacta---acaatgacatggtaatcttgtgcattagaagagacctctctta-atagcattcatcttcatcaccactacacacaa 116  Q
    |||||||||||||||||||||   |||||||||| ||| |||||||||||||||||||| ||||| | | ||||||||||||||||||||||||||||||    
T  5280008 tcattttcatcaccactactactaacaatgacattgtattcttgtgcattagaagagacttctctgacaaagcattcatcttcatcaccactacacacaa 5279909  T
Q  117 tatcattttcttcttgttcttgaca---ttgctccatattttcacggattggttcatcatatacgagataaactgttgttttcttcacaatgaaaccgtt 213  Q
    |      ||||||||||||||| ||   ||||||||| ||||| |  |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5279908 t------ttcttcttgttcttggcaatattgctccattttttctccaattggttcatcatatacgagataaactgttgttttcttcacaatgaaaccgtt 5279815  T
Q  214 gtcaaaaacagaaacaacctccactttgttacaaggttctatacttgatactactctctgtccctcttcatct 286  Q
     |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  5279814 ctcaaaaacaacaacaacctccactttgttacaaggttctatacttgatactactctctgaccctcttcatct 5279742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 161 - 271
Target Start/End: Original strand, 5242504 - 5242614
Alignment:
Q  161 attggttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttg 260  Q
    |||||||||||||||||||||||||||  ||| |||||||||||||||| ||| ||||||||| |||| |||||||||||||||| |||||||||||||     
T  5242504 attggttcatcatatacgagataaactactgtcttcttcacaatgaaactgttctcaaaaacaaaaacgacctccactttgttaccaggttctatacttc 5242603  T
Q  261 atactactctc 271  Q
    |||||||||||    
T  5242604 atactactctc 5242614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 137 - 286
Target Start/End: Original strand, 5126597 - 5126746
Alignment:
Q  137 tgacattgctccatattttcacggattggttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctcca 236  Q
    |||||||||| |||| ||||||  |||||||||||||||| ||||||||| | ||| |||||||||||||||||||| | |||||||  ||||| ||| |    
T  5126597 tgacattgcttcatagtttcaccaattggttcatcatatatgagataaacagctgtcttcttcacaatgaaaccgttcttaaaaacaacaacaatctcaa 5126696  T
Q  237 ctttgttacaaggttctatacttgatactactctctgtccctcttcatct 286  Q
    ||||||||| || |||||||||||||||||||||||  ||||| ||||||    
T  5126697 ctttgttaccagcttctatacttgatactactctctccccctcctcatct 5126746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 59 - 286
Target Start/End: Original strand, 5065338 - 5065566
Alignment:
Q  59 ttgtgcattagaagagacctctctta-atagcattcatcttcatcaccactacacacaatatcattttcttcttgttcttgacattgctccatattttca 157  Q
    |||||||| |||||||| ||| | || | ||||||||| ||||||||| ||||  |||||| |||| |  |||||| | ||||| | ||||   ||||||    
T  5065338 ttgtgcatgagaagagatctcgcctagaaagcattcattttcatcaccgctactaacaataacattcttatcttgtgcatgacactcctcccccttttca 5065437  T
Q  158 cggattggttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatac 257  Q
       |||||||||||||||| |||||||||||||||  ||||||||| ||||||||| |||||||||  |||||  |||||||| || | |||||| ||||    
T  5065438 gcaattggttcatcatatatgagataaactgttgtcctcttcacaacgaaaccgttctcaaaaacaacaacaaaatccactttatttccaggttcaatac 5065537  T
Q  258 ttgatactactctctgtccctcttcatct 286  Q
    |||||||||||||||| ||||| ||||||    
T  5065538 ttgatactactctctgcccctcctcatct 5065566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 161 - 270
Target Start/End: Complemental strand, 5427203 - 5427094
Alignment:
Q  161 attggttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttg 260  Q
    |||||||||||||||||||||||||||  ||| ||| |||||| ||||| ||| ||||||||| |||| ||||||| |||||||| ||||||||||||||    
T  5427203 attggttcatcatatacgagataaactactgtcttcgtcacaacgaaactgttctcaaaaacaaaaacgacctccattttgttaccaggttctatacttg 5427104  T
Q  261 atactactct 270  Q
    ||||||||||    
T  5427103 atactactct 5427094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 166 - 286
Target Start/End: Complemental strand, 5346327 - 5346207
Alignment:
Q  166 ttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttgatact 265  Q
    ||||||||||| |||||||| || ||| ||||||||||||||||| || |||| ||||   ||||||||||||||||||| ||||||||||||||||||     
T  5346327 ttcatcatatatgagataaattgctgtcttcttcacaatgaaaccattctcaataacaacgacaacctccactttgttaccaggttctatacttgataca 5346228  T
Q  266 actctctgtccctcttcatct 286  Q
    |||||||| ||||| ||||||    
T  5346227 actctctggccctcctcatct 5346207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 169 - 284
Target Start/End: Complemental strand, 5398341 - 5398226
Alignment:
Q  169 atcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttgatactact 268  Q
    ||||||||| |||||||||||||| ||||||||||||||| | || || |||||| | |||||||| |||||||||| |||||||||||||||||||||     
T  5398341 atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcgaaaacaaagacaacctcaactttgttaccaggttctatacttgatactacc 5398242  T
Q  269 ctctgtccctcttcat 284  Q
    || || ||||||||||    
T  5398241 ctttgcccctcttcat 5398226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 168 - 286
Target Start/End: Original strand, 5180773 - 5180891
Alignment:
Q  168 catcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttgatactac 267  Q
    |||||||||| ||||||| || ||| ||||||||||||||||  || ||||||||| |||| ||||||||||||||||  |||||||| |||||||||||    
T  5180773 catcatataccagataaattgctgtcttcttcacaatgaaacttttctcaaaaacaaaaacgacctccactttgttaccgggttctatgcttgatactac 5180872  T
Q  268 tctctgtccctcttcatct 286  Q
     ||||| ||||||||||||    
T  5180873 cctctgaccctcttcatct 5180891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 163 - 267
Target Start/End: Original strand, 5100812 - 5100916
Alignment:
Q  163 tggttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttgat 262  Q
    ||||||||| |||||||||||||||| ||| || ||||||||||||| ||| |||||||||  ||| ||||||||||||||||  |||||||||||||||    
T  5100812 tggttcatcgtatacgagataaactgctgtctttttcacaatgaaactgttctcaaaaacaacaacgacctccactttgttaccgggttctatacttgat 5100911  T
Q  263 actac 267  Q
    |||||    
T  5100912 actac 5100916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 163 - 267
Target Start/End: Original strand, 5135913 - 5136017
Alignment:
Q  163 tggttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttgat 262  Q
    ||||||||| |||||||||||||||| ||| || ||||||||||||| ||| |||||||||  ||| ||||||||||||||||  |||||||||||||||    
T  5135913 tggttcatcgtatacgagataaactgctgtctttttcacaatgaaactgttctcaaaaacaacaacgacctccactttgttaccgggttctatacttgat 5136012  T
Q  263 actac 267  Q
    |||||    
T  5136013 actac 5136017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 163 - 286
Target Start/End: Original strand, 5156007 - 5156130
Alignment:
Q  163 tggttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttgat 262  Q
    ||||||||| ||||| |||||||||||||| |||||||||||||||    | || |||||| ||   |||||||||||||||| |||||||| |||||||    
T  5156007 tggttcatcgtatacaagataaactgttgtcttcttcacaatgaaattaatctcgaaaacaaaatggacctccactttgttaccaggttctagacttgat 5156106  T
Q  263 actactctctgtccctcttcatct 286  Q
    ||||| ||||| ||||||||||||    
T  5156107 actaccctctgcccctcttcatct 5156130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 163 - 286
Target Start/End: Complemental strand, 5372398 - 5372275
Alignment:
Q  163 tggttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttgat 262  Q
    ||||||||| ||||||||||||| |||||| ||||||||||||||| | || || | |||| ||   | |||||||||||||| |||||||| |||||||    
T  5372398 tggttcatcgtatacgagataaattgttgtcttcttcacaatgaaatcattctcgagaacaaaatggatctccactttgttaccaggttctagacttgat 5372299  T
Q  263 actactctctgtccctcttcatct 286  Q
    ||||| ||||| ||||||||||||    
T  5372298 actaccctctgcccctcttcatct 5372275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 152 - 286
Target Start/End: Complemental strand, 5098523 - 5098389
Alignment:
Q  152 ttttcacggattggttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggtt 251  Q
    |||||||  ||| ||||||||||||| |||||||||| ||| || ||||||||||||| ||| || ||||||  ||  |||||||||||||||| |||||    
T  5098523 ttttcaccaatttgttcatcatataccagataaactgctgtctttttcacaatgaaactgttctcgaaaacaacaatgacctccactttgttaccaggtt 5098424  T
Q  252 ctatacttgatactactctctgtccctcttcatct 286  Q
    |||||||||||| ||| ||||| | ||| ||||||    
T  5098423 ctatacttgatattaccctctggctctcctcatct 5098389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 165 - 266
Target Start/End: Original strand, 23127306 - 23127407
Alignment:
Q  165 gttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttgatac 264  Q
    ||||||||||||| |||||||||||||| |||||||||| |||||| || ||||||||   ||||||||||| |||||||| |||||||  |||||||||    
T  23127306 gttcatcatatacaagataaactgttgtattcttcacaacgaaaccattctcaaaaacgacaacaacctccattttgttaccaggttctgcacttgatac 23127405  T
Q  265 ta 266  Q
    ||    
T  23127406 ta 23127407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 163 - 286
Target Start/End: Complemental strand, 5351701 - 5351578
Alignment:
Q  163 tggttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttgat 262  Q
    |||||||||||||||||||||||||  ||| || ||||||||| || | || || |||||| |||  ||||||||||||||||  |||||||||||||||    
T  5351701 tggttcatcatatacgagataaactactgtctttttcacaatgcaatcattctcgaaaacaaaaatgacctccactttgttactgggttctatacttgat 5351602  T
Q  263 actactctctgtccctcttcatct 286  Q
    ||||  ||||| ||||| ||||||    
T  5351601 actaacctctgcccctcctcatct 5351578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 161 - 286
Target Start/End: Original strand, 5352855 - 5352980
Alignment:
Q  161 attggttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttg 260  Q
    ||||||| ||||||||| ||||||| |||||| |||||||| |||||||  || || ||||||  ||| ||||| ||||||| || ||| || |||||||    
T  5352855 attggtttatcatataccagataaattgttgtcttcttcacgatgaaacaattctcgaaaacaataaccacctctactttgtcaccaggatccatacttg 5352954  T
Q  261 atactactctctgtccctcttcatct 286  Q
    ||||||||||||| ||||| ||||||    
T  5352955 atactactctctgcccctcctcatct 5352980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 163 - 285
Target Start/End: Complemental strand, 2939216 - 2939094
Alignment:
Q  163 tggttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttgat 262  Q
    ||||||||||||||||||||||| |||||  |||||||||||| || | || || | |||| ||   |||||||||||||||| ||||| || |||||||    
T  2939216 tggttcatcatatacgagataaattgttgccttcttcacaatgcaatcattctcgataacaaaatggacctccactttgttaccaggttatagacttgat 2939117  T
Q  263 actactctctgtccctcttcatc 285  Q
    ||||| ||||| || ||||||||    
T  2939116 actaccctctgcccttcttcatc 2939094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 161 - 286
Target Start/End: Original strand, 5072674 - 5072799
Alignment:
Q  161 attggttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttg 260  Q
    |||| |||||| |||| |||||||| | |||| || |||||||||||| |||| |||| ||||   ||||||||||||| ||||| ||| ||||||||||    
T  5072674 attgattcatcgtatatgagataaattattgtctttttcacaatgaaatcgttctcaacaacaacgacaacctccacttggttaccaggctctatacttg 5072773  T
Q  261 atactactctctgtccctcttcatct 286  Q
    |||||| |||||  ||||| ||||||    
T  5072774 atactaatctctcgccctcatcatct 5072799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 168 - 273
Target Start/End: Original strand, 5283223 - 5283328
Alignment:
Q  168 catcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttgatactac 267  Q
    |||||||||| ||||||| || ||| |||||||||||||||| ||| ||||||||| | |  ||||||||||||||||  ||||| |||||||||| |||    
T  5283223 catcatataccagataaattgctgtcttcttcacaatgaaactgttttcaaaaacaaatatgacctccactttgttacctggttcgatacttgatattac 5283322  T
Q  268 tctctg 273  Q
     |||||    
T  5283323 cctctg 5283328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 168 - 262
Target Start/End: Complemental strand, 5439307 - 5439213
Alignment:
Q  168 catcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttgat 262  Q
    ||||||||||||||||| ||| ||| || ||  |||||||| | || |  |||||| ||||||||||||||||||||| ||||||||||||||||    
T  5439307 catcatatacgagataagctgctgtctttttggcaatgaaatcattcttgaaaacaaaaacaacctccactttgttaccaggttctatacttgat 5439213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 170 - 279
Target Start/End: Complemental strand, 5253827 - 5253718
Alignment:
Q  170 tcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttgatactactc 269  Q
    ||||||| |||||||||||| ||  ||||||||||||||| ||| |||||||||  ||||| ||||||||| || | |||||| |||||| ||| |||||    
T  5253827 tcatatatgagataaactgtcgtcctcttcacaatgaaactgttctcaaaaacaacaacaaactccactttatttccaggttcaatacttaataatactc 5253728  T
Q  270 tctgtccctc 279  Q
    | || |||||    
T  5253727 tttgcccctc 5253718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 194 - 286
Target Start/End: Complemental strand, 5334455 - 5334363
Alignment:
Q  194 ttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttgatactactctctgtccctcttcatct 286  Q
    ||||||| ||||||| | || || |||||| |||| |||||||||||||||| |||||||| || ||||||||| ||||  ||||||||||||    
T  5334455 ttcttcaaaatgaaatcattctcgaaaacaaaaacgacctccactttgttaccaggttctagacatgatactaccctctacccctcttcatct 5334363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 165 - 279
Target Start/End: Original strand, 5124439 - 5124553
Alignment:
Q  165 gttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttgatac 264  Q
    ||||||||||||  | ||| | |||||| | |||||||||||| | ||| | ||||||| ||||||  |||||||| |||| |||||||||||| |||||    
T  5124439 gttcatcatatataatatacattgttgtctccttcacaatgaagcggttcttaaaaacaaaaacaaattccactttattaccaggttctatactcgatac 5124538  T
Q  265 tactctctgtccctc 279  Q
    || ||| || |||||    
T  5124539 taatctatgcccctc 5124553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 168 - 273
Target Start/End: Original strand, 5256113 - 5256218
Alignment:
Q  168 catcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttgatactac 267  Q
    |||||||||| | ||||| || ||| ||||||||||||||| | || |  |||||| | || ||||||||||||||||  ||||| |||||||||| |||    
T  5256113 catcatataccaaataaattgctgtcttcttcacaatgaaatcattcttgaaaacaaatacgacctccactttgttacctggttcaatacttgatattac 5256212  T
Q  268 tctctg 273  Q
     |||||    
T  5256213 cctctg 5256218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 168 - 279
Target Start/End: Complemental strand, 5448905 - 5448794
Alignment:
Q  168 catcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttgatactac 267  Q
    |||||||||| ||||| |||  ||| |||| |||| ||||| | || || |||||| |||| | |||||||||||| |  |||||||||||||||||||     
T  5448905 catcatataccagatatactactgtcttctccacagtgaaatcattctcgaaaacaaaaacgatctccactttgtttccgggttctatacttgatactaa 5448806  T
Q  268 tctctgtccctc 279  Q
     ||||| |||||    
T  5448805 cctctgcccctc 5448794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 140 - 272
Target Start/End: Original strand, 4122615 - 4122747
Alignment:
Q  140 cattgctccatattttcacggattggttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactt 239  Q
    |||||||| || ||||||| ||||||||||||||||| ||||||||||| ||| ||| |||||||||||| |||  ||||||||  ||||| ||||||||    
T  4122615 cattgctctattttttcaccgattggttcatcatatatgagataaactgatgtcttcatcacaatgaaactgtttccaaaaacaacaacaatctccactt 4122714  T
Q  240 tgttacaaggttctatacttgatactactctct 272  Q
    ||| || |||||| ||| ||||||| |||||||    
T  4122715 tgtcaccaggttccatatttgataccactctct 4122747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 90 - 268
Target Start/End: Complemental strand, 25569217 - 25569036
Alignment:
Q  90 attcatcttcatcaccactacacacaatatcattttcttcttgttcttgacattgctccatattttcacggattggttcatcatatacgagataaactgt 189  Q
    |||||| |||||||||| || | |||||| |||||||||||  |  ||||| |||||||||  |||| |  ||| ||||||| |||||||||||||||||    
T  25569217 attcattttcatcaccaataaaaacaatagcattttcttctgatgtttgactttgctccattatttcgccaattagttcatcgtatacgagataaactgt 25569118  T
Q  190 tgttttcttcacaatgaaaccgttg---tcaaaaacagaaacaacctccactttgttacaaggttctatacttgatactact 268  Q
    ||| ||||||||  |||||| |      ||||||||| ||||||||||||||||||| | ||||||||||||||||||||||    
T  25569117 tgtattcttcactttgaaactgcgccactcaaaaacaaaaacaacctccactttgtttccaggttctatacttgatactact 25569036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 128 - 273
Target Start/End: Original strand, 4132577 - 4132719
Alignment:
Q  128 tcttgttcttgacattgctccatattttcacggattggttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaa 227  Q
    |||||| | ||||||||| ||| ||||||||  |||||||||||||||| ||||||||||| ||| ||| |||||||||||| |||  |||||||   ||    
T  4132577 tcttgtgcatgacattgccccaaattttcaccaattggttcatcatatatgagataaactgctgtcttcatcacaatgaaactgttcccaaaaac---aa 4132673  T
Q  228 caacctccactttgttacaaggttctatacttgatactactctctg 273  Q
    ||| ||| ||||||| || |||||| ||| ||||||||||||||||    
T  4132674 caatctcgactttgtcaccaggttccatatttgatactactctctg 4132719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 163 - 273
Target Start/End: Original strand, 4319296 - 4319406
Alignment:
Q  163 tggttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttgat 262  Q
    |||||||||||||| ||||||||||| ||| ||| |||||||||||| |||  |||||||   ||||| |||||| |||| || |||||| ||| ||| |    
T  4319296 tggttcatcatatatgagataaactgctgtcttcatcacaatgaaactgttcccaaaaacgacaacaatctccaccttgtcaccaggttccatatttgtt 4319395  T
Q  263 actactctctg 273  Q
    || ||||||||    
T  4319396 acaactctctg 4319406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 161 - 207
Target Start/End: Original strand, 7884147 - 7884193
Alignment:
Q  161 attggttcatcatatacgagataaactgttgttttcttcacaatgaa 207  Q
    |||||||||||||| || ||||||| |||||||||||||||||||||    
T  7884147 attggttcatcatagacaagataaattgttgttttcttcacaatgaa 7884193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 206
Target Start/End: Complemental strand, 4346666 - 4346621
Alignment:
Q  161 attggttcatcatatacgagataaactgttgttttcttcacaatga 206  Q
    |||||||||||||||| ||||||||||| ||| ||| |||||||||    
T  4346666 attggttcatcatatatgagataaactgctgtcttcgtcacaatga 4346621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 206
Target Start/End: Complemental strand, 4362855 - 4362810
Alignment:
Q  161 attggttcatcatatacgagataaactgttgttttcttcacaatga 206  Q
    |||||||||||||||| ||||||||||| ||| ||| |||||||||    
T  4362855 attggttcatcatatatgagataaactgctgtcttcgtcacaatga 4362810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 5e-25; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 169 - 287
Target Start/End: Original strand, 47985393 - 47985511
Alignment:
Q  169 atcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttgatactact 268  Q
    ||||||||| |||||||||| | |  |||||||||||||||| || |||||||||  ||| ||||||||||||||||  |||||||||||||||||||||    
T  47985393 atcatatacaagataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccgggttctatacttgatactact 47985492  T
Q  269 ctctgtccctcttcatctc 287  Q
    ||||  ||||| |||||||    
T  47985493 ctctccccctcctcatctc 47985511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 169 - 287
Target Start/End: Original strand, 48003967 - 48004085
Alignment:
Q  169 atcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttgatactact 268  Q
    ||||||||| |||||||||| | |  |||||||||||||||| || |||||||||  ||| ||||||||||||||||  |||||||||||||||||||||    
T  48003967 atcatatacaagataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccgggttctatacttgatactact 48004066  T
Q  269 ctctgtccctcttcatctc 287  Q
    ||||  ||||| |||||||    
T  48004067 ctctccccctcctcatctc 48004085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 169 - 287
Target Start/End: Original strand, 47994680 - 47994798
Alignment:
Q  169 atcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttgatactact 268  Q
    ||||||||| |||||||||| | |  |||||||||||||||| || |||||||||  ||| ||||||||||||||||  | |||||||||||||||||||    
T  47994680 atcatatacaagataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccggattctatacttgatactact 47994779  T
Q  269 ctctgtccctcttcatctc 287  Q
    ||||  ||||| |||||||    
T  47994780 ctctccccctcctcatctc 47994798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 169 - 287
Target Start/End: Original strand, 48013252 - 48013370
Alignment:
Q  169 atcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttgatactact 268  Q
    ||||||||| |||||||||| | |  |||||||||||||||| || |||||||||  ||| ||||||||||||||||  | |||||||||||||||||||    
T  48013252 atcatatacaagataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttaccggattctatacttgatactact 48013351  T
Q  269 ctctgtccctcttcatctc 287  Q
    ||||  ||||| |||||||    
T  48013352 ctctccccctcctcatctc 48013370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 161 - 286
Target Start/End: Original strand, 36212913 - 36213038
Alignment:
Q  161 attggttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttg 260  Q
    |||||||||||||| | ||||||||  | ||| |||||||||||||||  ||| |||||||||  ||||||||||| ||| | || ||||||||||||||    
T  36212913 attggttcatcataaatgagataaatcgctgtcttcttcacaatgaaattgttctcaaaaacaacaacaacctccattttatcaccaggttctatacttg 36213012  T
Q  261 atactactctctgtccctcttcatct 286  Q
    |||||| |||||| ||||| ||||||    
T  36213013 atactaatctctgcccctcctcatct 36213038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 170 - 266
Target Start/End: Original strand, 7878 - 7974
Alignment:
Q  170 tcatatacgagataaactgttgttttcttcacaatgaaaccgttgtcaaaaacagaaacaacctccactttgttacaaggttctatacttgatacta 266  Q
    |||||||  ||||||| ||||||||  ||| ||||||||||||   ||||||||  |||||||||||||||||| |  ||||||| |||||||||||    
T  7878 tcatatataagataaattgttgtttctttcgcaatgaaaccgtccccaaaaacaacaacaacctccactttgtttccgggttctacacttgatacta 7974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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