View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11386A_low_19 (Length: 465)
Name: NF11386A_low_19
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386A_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 1 - 456
Target Start/End: Original strand, 1702322 - 1702778
Alignment:
| Q |
1 |
gagtctttggatatctgtgctacccatggcttcgaccatactctcaaaataagttatccaatcgaagcatgccatgtgttttctttggctattctacaca |
100 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
1702322 |
gagtctttggatgtctgtgctacccatggcttcgaccatactctcaaaataagttatccaatcgaagcatgccatgtgttttctttggctactctacaca |
1702421 |
T |
|
| Q |
101 |
acatcatgcctaccaatgttatcacccacccactcaaaagttgtatctctcaagacacgtcacctttcatgagtcactctttcaatttt-attgaatctt |
199 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |
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| T |
1702422 |
acatcatgcctaccaatgttatcacccacccactcaaaagttgtatctctcaagacacgtcacctttcatgagtcactctttccatttttattgaatctt |
1702521 |
T |
|
| Q |
200 |
tatgcctcgtccacgtcttctattttaaattcaaactcaaacactaacaagcactttccttctcatcatcctcttattattcaacaccttagccatccta |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
1702522 |
tatgcctcgtccacgtcttctattttaaattcaaactcaaacactagcaaacactttccttctcatcatcctcttattattcaacaccttaaccatccta |
1702621 |
T |
|
| Q |
300 |
ttattccttcaccttctcctcaaaattcaaactcatcacttatccctacacttcttatctccctcactacacgtactccaactttatctcctcaaatttc |
399 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
1702622 |
ttattcctccaccttctcctcaaaattcaaactcatcacttatccctacacctcttatctcccccactacacgtactccaactttatctcctcaaatttc |
1702721 |
T |
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| Q |
400 |
tcaagttcccactaactcttccacgagatcacttactggaactgcatcatcaacacc |
456 |
Q |
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| T |
1702722 |
tcaagttcccactaactcttccacgagatcacttactggaactgcatcatcaacacc |
1702778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 99 - 157
Target Start/End: Complemental strand, 26592018 - 26591960
Alignment:
| Q |
99 |
caacatcatgcctaccaatgttatcacccacccactcaaaagttgtatctctcaagaca |
157 |
Q |
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|||||||||||||||||||| || || || ||||||||||| || |||||||| ||||| |
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| T |
26592018 |
caacatcatgcctaccaatgctaccatcctcccactcaaaaattatatctctccagaca |
26591960 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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