View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11386A_low_203 (Length: 286)
Name: NF11386A_low_203
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386A_low_203 |
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| [»] scaffold0121 (1 HSPs) |
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Alignment Details
Target: scaffold0121 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: scaffold0121
Description:
Target: scaffold0121; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 21 - 277
Target Start/End: Complemental strand, 26625 - 26369
Alignment:
| Q |
21 |
aattgcgacaaccacatgggcaccattctaaatgtagacggaagttgcaatgggactcctatccgtactagttttggcggcattttccgcaacaattggg |
120 |
Q |
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| T |
26625 |
aattgcgacaaccacatgggcaccgttctaaatgtagacggaagttgcaatgggactcctatccgtactggttttggcggcattttccgcaacaattggg |
26526 |
T |
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| Q |
121 |
gtctttccctctccaaattcttgtgtatgatctcccattttgaagacannnnnnnggcggagctggcagcaatttaccactgcttgtgcatggctattga |
220 |
Q |
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| T |
26525 |
gtctttccctctctacattctcgtgtatgatctcccattttgaagacatttttttggcggagctgacaacaaattaccactgcttgtgcatggccattga |
26426 |
T |
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| Q |
221 |
tatgggtagagatgatttggcttgttacttggactccctcctttccattaatctcat |
277 |
Q |
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| T |
26425 |
tatgggtagagataatttggcttgttacttggactccctcctttccattaatctcat |
26369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 5e-28; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 21 - 277
Target Start/End: Complemental strand, 50522167 - 50521911
Alignment:
| Q |
21 |
aattgcgacaaccacatgggcaccattctaaatgtagacggaagttgcaatgggactcctatccgtactagttttggcggcattttccgcaacaattggg |
120 |
Q |
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| T |
50522167 |
aattgcaacaatcatatgggcaccattctgaatgttgatgggagttgcaatggaactcctattcgaactagttttggcggtgtttttcgcaataatgggg |
50522068 |
T |
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| Q |
121 |
gtctttccctctccaaattcttgtgtatgatctcccattttgaagacannnnnnnggcggagctggcagcaatttaccactgcttgtgcatggctattga |
220 |
Q |
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| T |
50522067 |
gtcttttcctctcggctttctcatgcatgatctcccaatcagaagacattttgctagctgaactaacaacaatctatcatcgcttgtgcatggctattga |
50521968 |
T |
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| Q |
221 |
tatgggtagagatgatttggcttgttacttggactccctcctttccattaatctcat |
277 |
Q |
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| T |
50521967 |
catgggtgtagatgatttggcttgttactcaaattccctcctttccattaatctcat |
50521911 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 195 - 277
Target Start/End: Original strand, 1089903 - 1089985
Alignment:
| Q |
195 |
taccactgcttgtgcatggctattgatatgggtagagatgatttggcttgttacttggactccctcctttccattaatctcat |
277 |
Q |
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| T |
1089903 |
taccacagcttgcgcatggctattgatatgggtatagacgatttgtcttgttactgagattccctactttccattaatctcat |
1089985 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 44 - 277
Target Start/End: Complemental strand, 45124822 - 45124590
Alignment:
| Q |
44 |
cattctaaatgtagacggaagttgcaatgggactcctatccgtactagttttggcggcattttccgcaacaattggggtctttccctctccaaattcttg |
143 |
Q |
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| T |
45124822 |
cattctgaatgttgatgggagttgcaatggtactccaacccgtactggttttggcggcatttttcgcaataat-ggggtcttttcctctcggctttctca |
45124724 |
T |
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| Q |
144 |
tgtatgatctcccattttgaagacannnnnnnggcggagctggcagcaatttaccactgcttgtgcatggctattgatatgggtagagatgatttggctt |
243 |
Q |
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| T |
45124723 |
ggtatgatctcccattaagtagacattttgttggctgaactaacaacaatctatcacggcttgcgcatggctgttgacataggtatagatgatttggcat |
45124624 |
T |
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| Q |
244 |
gttacttggactccctcctttccattaatctcat |
277 |
Q |
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| T |
45124623 |
gttactcggattccctcctctccattaatctcat |
45124590 |
T |
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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 40 - 117
Target Start/End: Complemental strand, 32132377 - 32132301
Alignment:
| Q |
40 |
gcaccattctaaatgtagacggaagttgcaatgggactcctatccgtactagttttggcggcattttccgcaacaatt |
117 |
Q |
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| T |
32132377 |
gcaccattctgaatgtagacggaagctgtaacgggactcctattcgtac-cgttttggtggcgtgttccgcaacaatt |
32132301 |
T |
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