View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11386A_low_207 (Length: 284)
Name: NF11386A_low_207
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386A_low_207 |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 278
Target Start/End: Complemental strand, 36970777 - 36970499
Alignment:
| Q |
1 |
aagacaagtgtgaagaagatgcaacaaatccaagtaccaaacatagtagtcatcggtaagaaaatataagcagttaaaagggttttaaaagtcaaatgnn |
100 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
36970777 |
aagacaagtttgaagaagatgcaacaaatccaagtaccaaacatagtagtcatcggtaagaaaatacaagcagttaaaagggttttaaaagtcaaatgtt |
36970678 |
T |
|
| Q |
101 |
nnnnn-gcttctatttcgttacggattggactacaaaagagaactcataaaatccacgcttttctagcgtatctttaagtagggtttgctccttcaaatc |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| |
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| T |
36970677 |
ttttttgcttctatttcgttacggattggactacaaaagagaactcataaaatccatgcttttctagagtatctttaagtagggtttgctccttcaaatc |
36970578 |
T |
|
| Q |
200 |
aatcttggagttcatttgtagttcctttccttttctgaagatggaatcaatgaagaagaacatttctaatattcttgga |
278 |
Q |
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|||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |
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| T |
36970577 |
aatcttggagttaatatgtagttcctttccttttctgaagatggaatcaatgaagaagaacatttctaattttgttgga |
36970499 |
T |
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