View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11386A_low_21 (Length: 460)

Name: NF11386A_low_21
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11386A_low_21
NF11386A_low_21
[»] chr1 (9 HSPs)
chr1 (22-346)||(8016214-8016541)
chr1 (227-284)||(46252676-46252733)
chr1 (249-286)||(1565551-1565588)
chr1 (227-264)||(3223706-3223743)
chr1 (229-282)||(5886990-5887043)
chr1 (337-366)||(8016160-8016189)
chr1 (227-284)||(10809364-10809421)
chr1 (238-295)||(38503470-38503527)
chr1 (230-266)||(29635384-29635420)
[»] chr6 (3 HSPs)
chr6 (227-284)||(3528822-3528879)
chr6 (227-276)||(281842-281891)
chr6 (223-264)||(6536986-6537027)
[»] chr7 (1 HSPs)
chr7 (227-283)||(25670580-25670636)
[»] chr5 (1 HSPs)
chr5 (230-284)||(11707074-11707128)
[»] chr2 (4 HSPs)
chr2 (238-284)||(35379021-35379067)
chr2 (230-284)||(44443340-44443394)
chr2 (227-284)||(43199778-43199835)
chr2 (224-284)||(43910990-43911050)
[»] chr8 (2 HSPs)
chr8 (23-60)||(4577008-4577045)
chr8 (227-284)||(7714261-7714318)
[»] chr3 (2 HSPs)
chr3 (161-194)||(1288764-1288797)
chr3 (232-284)||(41633379-41633431)
[»] chr4 (1 HSPs)
chr4 (165-197)||(38336816-38336848)


Alignment Details
Target: chr1 (Bit Score: 282; Significance: 1e-158; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 22 - 346
Target Start/End: Complemental strand, 8016541 - 8016214
Alignment:
Q  22 gttttatgcattggatcttggaggaacaaactttcgtgtgttgagggtacaattaggtggcaaagatgatcgtgtcattgatgttgactttgatcaagtt 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8016541 gttttatgcattggatcttggaggaacaaactttcgtgtgttgagggtacaattaggtggcaaagatgatcgtgtcattgatgttgactttgatcaagtt 8016442  T
Q  122 gctatacctcatgatctaatgtttgctacatccgaggttagtttgttttgattgacttatttgagctt---atcaattgtctcgaatatttatgagactg 218  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||   ||||||||||| |||||||||||||||||    
T  8016441 gctatacctcatgatctaatgtttgctacgtccgaggttagtttgttttgattgacttatttgagattatcatcaattgtcttgaatatttatgagactg 8016342  T
Q  219 gccaggagaacttatgaaatgtttataacttgttttcagcttattttcctgagctctccaagatagataacagaaactcatatgaaaacaataactccat 318  Q
     || ||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  8016341 tccgggagaacttatgacatgttcataacttgttttcagcttattttcctaagctctccaagatagataacagaaactcatatgaaaacaataactccat 8016242  T
Q  319 tttattttttgttatagaaaaatggctt 346  Q
    ||||||||||||||||||||||||||||    
T  8016241 tttattttttgttatagaaaaatggctt 8016214  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 227 - 284
Target Start/End: Original strand, 46252676 - 46252733
Alignment:
Q  227 aacttatgaaatgtttataacttgttttcagcttattttcctgagctctccaagatag 284  Q
    ||||||||| ||||| |||| |||||||||| |||||||| | |||||||||||||||    
T  46252676 aacttatgacatgttcataagttgttttcaggttattttcataagctctccaagatag 46252733  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 249 - 286
Target Start/End: Original strand, 1565551 - 1565588
Alignment:
Q  249 tgttttcagcttattttcctgagctctccaagatagat 286  Q
    |||||||||||||||||| |||||||||||| ||||||    
T  1565551 tgttttcagcttattttcatgagctctccaaaatagat 1565588  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 264
Target Start/End: Complemental strand, 3223743 - 3223706
Alignment:
Q  227 aacttatgaaatgtttataacttgttttcagcttattt 264  Q
    ||||||||| |||||||||| |||||||||||||||||    
T  3223743 aacttatgacatgtttataagttgttttcagcttattt 3223706  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 229 - 282
Target Start/End: Original strand, 5886990 - 5887043
Alignment:
Q  229 cttatgaaatgtttataacttgttttcagcttattttcctgagctctccaagat 282  Q
    ||||||| ||||| |||| ||||||||||||||||||| | || ||||||||||    
T  5886990 cttatgacatgttcataagttgttttcagcttattttcgtaagttctccaagat 5887043  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 337 - 366
Target Start/End: Complemental strand, 8016189 - 8016160
Alignment:
Q  337 aaaatggctttgcatgttaaagctttgatg 366  Q
    ||||||||||||||||||||||||||||||    
T  8016189 aaaatggctttgcatgttaaagctttgatg 8016160  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 284
Target Start/End: Complemental strand, 10809421 - 10809364
Alignment:
Q  227 aacttatgaaatgtttataacttgttttcagcttattttcctgagctctccaagatag 284  Q
    ||||||||| ||||||||||  |||||||||||||||||| | || ||||||| ||||    
T  10809421 aacttatgacatgtttataatatgttttcagcttattttcataagttctccaatatag 10809364  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 238 - 295
Target Start/End: Original strand, 38503470 - 38503527
Alignment:
Q  238 tgtttataacttgttttcagcttattttcctgagctctccaagatagataacagaaac 295  Q
    |||| |||| ||||||||||||||||||| | || |||||||||||| ||||| ||||    
T  38503470 tgttcataagttgttttcagcttattttcataagttctccaagatagctaacaaaaac 38503527  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 230 - 266
Target Start/End: Complemental strand, 29635420 - 29635384
Alignment:
Q  230 ttatgaaatgtttataacttgttttcagcttattttc 266  Q
    |||||| |||||||||| |||||||||||||||||||    
T  29635420 ttatgacatgtttataagttgttttcagcttattttc 29635384  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 227 - 284
Target Start/End: Complemental strand, 3528879 - 3528822
Alignment:
Q  227 aacttatgaaatgtttataacttgttttcagcttattttcctgagctctccaagatag 284  Q
    ||||||||| ||||  |||||||||||||| ||||||||| | |||||||||||||||    
T  3528879 aacttatgacatgtccataacttgttttcatcttattttcataagctctccaagatag 3528822  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 276
Target Start/End: Original strand, 281842 - 281891
Alignment:
Q  227 aacttatgaaatgtttataacttgttttcagcttattttcctgagctctc 276  Q
    ||||||||| |||| ||||| ||||||||||||||||| | |||||||||    
T  281842 aacttatgacatgtctataagttgttttcagcttatttccatgagctctc 281891  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 264
Target Start/End: Complemental strand, 6537027 - 6536986
Alignment:
Q  223 ggagaacttatgaaatgtttataacttgttttcagcttattt 264  Q
    ||||||||||||| ||||| |||| |||||||||||||||||    
T  6537027 ggagaacttatgacatgttcataagttgttttcagcttattt 6536986  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 227 - 283
Target Start/End: Original strand, 25670580 - 25670636
Alignment:
Q  227 aacttatgaaatgtttataacttgttttcagcttattttcctgagctctccaagata 283  Q
    ||||||||| ||||| |||| |||||||||||||||||||   ||||||||||||||    
T  25670580 aacttatgacatgttaataaattgttttcagcttattttcacaagctctccaagata 25670636  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 230 - 284
Target Start/End: Complemental strand, 11707128 - 11707074
Alignment:
Q  230 ttatgaaatgtttataacttgttttcagcttattttcctgagctctccaagatag 284  Q
    |||||| |||||||||| |||||||||||||||||||   |||||| ||||||||    
T  11707128 ttatgacatgtttataagttgttttcagcttattttcaaaagctctacaagatag 11707074  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 284
Target Start/End: Original strand, 35379021 - 35379067
Alignment:
Q  238 tgtttataacttgttttcagcttattttcctgagctctccaagatag 284  Q
    |||| |||| ||||||||||||||||||| | |||||||||||||||    
T  35379021 tgttcataagttgttttcagcttattttcataagctctccaagatag 35379067  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 230 - 284
Target Start/End: Complemental strand, 44443394 - 44443340
Alignment:
Q  230 ttatgaaatgtttataacttgttttcagcttattttcctgagctctccaagatag 284  Q
    |||||||||||| |||| ||||||||||||||||||| |  |||||| |||||||    
T  44443394 ttatgaaatgttcataagttgttttcagcttattttcatatgctctcaaagatag 44443340  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 284
Target Start/End: Original strand, 43199778 - 43199835
Alignment:
Q  227 aacttatgaaatgtttataacttgttttcagcttattttcctgagctctccaagatag 284  Q
    ||||| ||| |||||||||| |||||||||||||| |||| | ||| |||||||||||    
T  43199778 aacttgtgacatgtttataagttgttttcagcttaatttcataagccctccaagatag 43199835  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 284
Target Start/End: Original strand, 43910990 - 43911050
Alignment:
Q  224 gagaacttatgaaatgtttataacttgttttcagcttattttcctgagctctccaagatag 284  Q
    |||||||||||| ||||| |||| |||||||||||||||| ||   |||| ||||||||||    
T  43910990 gagaacttatgacatgttcataagttgttttcagcttattatcacaagctttccaagatag 43911050  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 23 - 60
Target Start/End: Complemental strand, 4577045 - 4577008
Alignment:
Q  23 ttttatgcattggatcttggaggaacaaactttcgtgt 60  Q
    |||||||||||||| ||||||||||| |||||||||||    
T  4577045 ttttatgcattggaccttggaggaactaactttcgtgt 4577008  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 227 - 284
Target Start/End: Complemental strand, 7714318 - 7714261
Alignment:
Q  227 aacttatgaaatgtttataacttgttttcagcttattttcctgagctctccaagatag 284  Q
    ||||||||||||||  || |  |||||||| ||||||||| |||||||||||||||||    
T  7714318 aacttatgaaatgtcgatgagctgttttcaacttattttcatgagctctccaagatag 7714261  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 161 - 194
Target Start/End: Original strand, 1288764 - 1288797
Alignment:
Q  161 agtttgttttgattgacttatttgagcttatcaa 194  Q
    ||||||||| ||||||||||||||||||||||||    
T  1288764 agtttgtttggattgacttatttgagcttatcaa 1288797  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 232 - 284
Target Start/End: Complemental strand, 41633431 - 41633379
Alignment:
Q  232 atgaaatgtttataacttgttttcagcttattttcctgagctctccaagatag 284  Q
    |||| |||| ||||| ||||||||||||||||||| | |||||||||| ||||    
T  41633431 atgacatgtctataaattgttttcagcttattttcataagctctccaaaatag 41633379  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 165 - 197
Target Start/End: Original strand, 38336816 - 38336848
Alignment:
Q  165 tgttttgattgacttatttgagcttatcaattg 197  Q
    |||||||||||||||||||||||||||| ||||    
T  38336816 tgttttgattgacttatttgagcttatccattg 38336848  T

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