View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11386A_low_211 (Length: 282)
Name: NF11386A_low_211
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386A_low_211 |
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Alignment Details
Target: chr1 (Bit Score: 156; Significance: 6e-83; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 16 - 224
Target Start/End: Complemental strand, 23915414 - 23915210
Alignment:
| Q |
16 |
atgcatgagtcgcacctcgtcatagtacgtcattactggtatgaactgagttactaacaaaaaaccaagaatattaatggtgaatgaatttctttctgac |
115 |
Q |
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| T |
23915414 |
atgcatgagtcgcacctcgtcatagtacgtcattactggtatgaactgagttactaacaaaaaaccaagaatattaatggtgaatgaatttctttctgac |
23915315 |
T |
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| Q |
116 |
tacattcattgacttattttgactgagtgaagtccttnnnnnnnnggtactgcatcataatgcctataaattaagaaccctaagtaacgtctcttcttca |
215 |
Q |
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| T |
23915314 |
tacattcattgacttattttgactgagtgaagtccttaaaaaaaaggtactgcattataatgcctataaattaagaaccc----taacgtctattctcca |
23915219 |
T |
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| Q |
216 |
ttctcctca |
224 |
Q |
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||||||||| |
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| T |
23915218 |
ttctcctca |
23915210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 226 - 282
Target Start/End: Complemental strand, 23915185 - 23915129
Alignment:
| Q |
226 |
aagagaaaatggcatcttcaacttatttatccattttgctcaccatttcaatgatct |
282 |
Q |
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| T |
23915185 |
aagagaaaatggcatcttcaacctatttatccattttgctcaccatttcaatgatct |
23915129 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 226 - 282
Target Start/End: Complemental strand, 23922834 - 23922778
Alignment:
| Q |
226 |
aagagaaaatggcatcttcaacttatttatccattttgctcaccatttcaatgatct |
282 |
Q |
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| T |
23922834 |
aagagaaaatggcatcttcagcctatttatccattttgctcaccatttcaatgatct |
23922778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 161 - 224
Target Start/End: Complemental strand, 23922935 - 23922872
Alignment:
| Q |
161 |
ggtactgcatcataatgcctataaattaagaaccctaagtaacgtctcttcttcattctcctca |
224 |
Q |
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| T |
23922935 |
ggtactacattataatgcctatatattaagaaccctaagtaacgtctcttctccactctcctca |
23922872 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 74 - 142
Target Start/End: Complemental strand, 23923022 - 23922954
Alignment:
| Q |
74 |
aaaaaaccaagaatattaatggtgaatgaatttctttctgactacattcattgacttattttgactgag |
142 |
Q |
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||||||||||||||||||||||||| | |||| |||||||||||||||||| ||| ||||||| |||| |
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| T |
23923022 |
aaaaaaccaagaatattaatggtgactttatttgtttctgactacattcattaactcattttgattgag |
23922954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 234 - 280
Target Start/End: Complemental strand, 25803278 - 25803232
Alignment:
| Q |
234 |
atggcatcttcaacttatttatccattttgctcaccatttcaatgat |
280 |
Q |
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|||||| ||||||| |||||||| |||||||||||||||||||||| |
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| T |
25803278 |
atggcaccttcaacatatttatcatttttgctcaccatttcaatgat |
25803232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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