View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11386A_low_213 (Length: 280)

Name: NF11386A_low_213
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11386A_low_213
NF11386A_low_213
[»] chr1 (15 HSPs)
chr1 (66-263)||(52248249-52248446)
chr1 (7-61)||(43571130-43571184)
chr1 (7-61)||(5489778-5489832)
chr1 (7-65)||(7447824-7447881)
chr1 (7-61)||(37814780-37814834)
chr1 (7-61)||(48499006-48499060)
chr1 (11-61)||(14427349-14427399)
chr1 (7-61)||(50448304-50448358)
chr1 (8-61)||(750350-750403)
chr1 (7-63)||(4401327-4401384)
chr1 (16-75)||(35003282-35003341)
chr1 (18-61)||(38335920-38335963)
chr1 (7-61)||(24769543-24769597)
chr1 (11-61)||(44112679-44112729)
chr1 (11-61)||(48119630-48119680)
[»] scaffold0119 (1 HSPs)
scaffold0119 (7-61)||(687-741)
[»] chr6 (15 HSPs)
chr6 (7-61)||(26670053-26670107)
chr6 (7-61)||(7273379-7273433)
chr6 (7-63)||(30735982-30736038)
chr6 (7-61)||(3213402-3213456)
chr6 (7-61)||(9698377-9698431)
chr6 (7-61)||(26466801-26466855)
chr6 (7-64)||(24204031-24204088)
chr6 (7-61)||(30014345-30014399)
chr6 (7-61)||(33242405-33242459)
chr6 (18-65)||(27441540-27441587)
chr6 (7-61)||(7292749-7292803)
chr6 (7-61)||(7367551-7367605)
chr6 (7-61)||(13743265-13743319)
chr6 (7-61)||(13748765-13748819)
chr6 (7-61)||(21293721-21293775)
[»] chr7 (17 HSPs)
chr7 (7-61)||(35069723-35069777)
chr7 (7-61)||(5015397-5015451)
chr7 (7-61)||(24001056-24001110)
chr7 (7-61)||(42538475-42538529)
chr7 (7-61)||(42972854-42972908)
chr7 (16-61)||(5194284-5194329)
chr7 (16-61)||(5810977-5811022)
chr7 (7-63)||(44326178-44326234)
chr7 (18-61)||(43317445-43317488)
chr7 (7-65)||(44416978-44417036)
chr7 (7-64)||(10573748-10573805)
chr7 (7-63)||(16180401-16180456)
chr7 (7-63)||(43343668-43343724)
chr7 (30-61)||(38160661-38160692)
chr7 (7-61)||(41861676-41861730)
chr7 (32-61)||(9216304-9216333)
chr7 (7-63)||(4638243-4638299)
[»] chr5 (11 HSPs)
chr5 (7-65)||(25915031-25915089)
chr5 (7-61)||(33855087-33855141)
chr5 (7-61)||(2614693-2614747)
chr5 (7-61)||(18033984-18034038)
chr5 (7-61)||(22512307-22512361)
chr5 (7-61)||(41334707-41334761)
chr5 (7-61)||(7617135-7617189)
chr5 (11-61)||(32473442-32473492)
chr5 (7-61)||(33801471-33801525)
chr5 (7-63)||(5256995-5257051)
chr5 (7-61)||(38470581-38470635)
[»] chr3 (19 HSPs)
chr3 (7-61)||(42100690-42100744)
chr3 (7-64)||(1078226-1078283)
chr3 (7-61)||(25413683-25413737)
chr3 (7-61)||(46941055-46941109)
chr3 (7-61)||(47191070-47191123)
chr3 (7-61)||(54246192-54246246)
chr3 (7-63)||(27748563-27748619)
chr3 (7-61)||(40808867-40808921)
chr3 (7-61)||(54237098-54237152)
chr3 (7-61)||(4190309-4190363)
chr3 (7-61)||(24688446-24688500)
chr3 (7-61)||(42394463-42394517)
chr3 (7-61)||(45126972-45127026)
chr3 (16-59)||(29558287-29558330)
chr3 (7-61)||(25996270-25996324)
chr3 (11-61)||(34791831-34791881)
chr3 (7-61)||(53273728-53273782)
chr3 (16-61)||(36150132-36150177)
chr3 (18-63)||(53581913-53581958)
[»] chr8 (18 HSPs)
chr8 (7-63)||(30912606-30912662)
chr8 (7-63)||(42295195-42295251)
chr8 (7-63)||(42699257-42699313)
chr8 (7-61)||(29705364-29705418)
chr8 (7-61)||(2546998-2547052)
chr8 (7-61)||(11582768-11582822)
chr8 (7-61)||(36743527-36743581)
chr8 (7-63)||(20148760-20148816)
chr8 (26-61)||(28977148-28977183)
chr8 (16-63)||(33630046-33630093)
chr8 (7-61)||(2166007-2166061)
chr8 (7-61)||(30660786-30660840)
chr8 (7-61)||(45397318-45397372)
chr8 (7-63)||(29800994-29801050)
chr8 (17-61)||(42197489-42197533)
chr8 (18-61)||(5754905-5754948)
chr8 (11-61)||(35181518-35181568)
chr8 (7-64)||(26125634-26125691)
[»] chr4 (23 HSPs)
chr4 (7-61)||(1771310-1771364)
chr4 (7-63)||(43514730-43514786)
chr4 (7-65)||(39631098-39631157)
chr4 (7-61)||(27550311-27550365)
chr4 (11-61)||(28988475-28988525)
chr4 (8-61)||(35017735-35017788)
chr4 (7-61)||(27316757-27316811)
chr4 (7-61)||(33703143-33703197)
chr4 (7-64)||(43949845-43949903)
chr4 (16-61)||(41878408-41878453)
chr4 (7-61)||(12496958-12497012)
chr4 (7-61)||(25051695-25051749)
chr4 (11-63)||(3756294-3756346)
chr4 (7-63)||(27893886-27893942)
chr4 (18-61)||(28982877-28982920)
chr4 (18-60)||(23204833-23204875)
chr4 (7-61)||(27864566-27864620)
chr4 (15-65)||(41327595-41327645)
chr4 (18-64)||(43735741-43735787)
chr4 (7-61)||(55966390-55966444)
chr4 (16-61)||(711962-712007)
chr4 (16-61)||(23035982-23036027)
chr4 (23-63)||(46412519-46412559)
[»] chr2 (20 HSPs)
chr2 (7-61)||(1750416-1750470)
chr2 (7-61)||(16096749-16096803)
chr2 (7-63)||(33229301-33229358)
chr2 (7-61)||(12302297-12302351)
chr2 (7-61)||(30838634-30838688)
chr2 (11-61)||(34817824-34817874)
chr2 (11-73)||(41282022-41282084)
chr2 (17-63)||(43490455-43490501)
chr2 (7-61)||(4764770-4764824)
chr2 (11-61)||(12415508-12415558)
chr2 (11-61)||(12427568-12427618)
chr2 (11-61)||(18491707-18491757)
chr2 (7-61)||(19047159-19047213)
chr2 (7-61)||(43335807-43335861)
chr2 (28-61)||(42849911-42849944)
chr2 (20-64)||(7070415-7070459)
chr2 (11-63)||(11825702-11825754)
chr2 (11-61)||(966882-966932)
chr2 (11-61)||(43114559-43114609)
chr2 (35-63)||(8896655-8896683)
[»] scaffold0187 (2 HSPs)
scaffold0187 (18-61)||(14243-14286)
scaffold0187 (18-61)||(24571-24614)
[»] scaffold0157 (1 HSPs)
scaffold0157 (7-61)||(23465-23519)
[»] scaffold0038 (1 HSPs)
scaffold0038 (7-61)||(112657-112711)
[»] scaffold0003 (1 HSPs)
scaffold0003 (18-65)||(45774-45821)
[»] scaffold0385 (1 HSPs)
scaffold0385 (7-61)||(11253-11307)


Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 66 - 263
Target Start/End: Original strand, 52248249 - 52248446
Alignment:
Q  66 gataaaattgctagcttttctctctaggtcaatatatattgtgacatgtagtctcaggacgtgaccatttaagcatactaatatatatggagtagtatgt 165  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  52248249 gataaaatggctagcttttctctctaggtcaatatatattgtgacatgtattctcaggacgtgaccatttaagcatactaatatatatggagtagtatgt 52248348  T
Q  166 gttacgaacttcacatgtcatgacttattataacgggacactttgtgtactacactactttgcccagtgaaatcaaaattgccgtataattatgtact 263  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  52248349 gttacgaacttcacatgtcatgacttattataacgggacactttgtgtactacactactttgcccagtgaaatcaaaattgccgtatacttatgtact 52248446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 7 - 61
Target Start/End: Original strand, 43571130 - 43571184
Alignment:
Q  7 aatacatgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 61  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  43571130 aatacatggggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 43571184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 61
Target Start/End: Complemental strand, 5489832 - 5489778
Alignment:
Q  7 aatacatgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 61  Q
    |||||||  ||||||||||| | ||||||||||||||||||||||||||||||||    
T  5489832 aatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacatttt 5489778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 65
Target Start/End: Complemental strand, 7447881 - 7447824
Alignment:
Q  7 aatacatgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttttcaa 65  Q
    |||||||| ||||||||||| | |||||||||||||| |||||||||||||||||||||    
T  7447881 aatacatg-ggtgtacaatgggatgtaggaataaaggatgttcatgtaacatttttcaa 7447824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 61
Target Start/End: Complemental strand, 37814834 - 37814780
Alignment:
Q  7 aatacatgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 61  Q
    |||||||| ||||||||||||| |||| |||||||||||||| ||||||||||||    
T  37814834 aatacatggggtgtacaatgagatgtatgaataaagggtgtttatgtaacatttt 37814780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 61
Target Start/End: Original strand, 48499006 - 48499060
Alignment:
Q  7 aatacatgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 61  Q
    ||||||||||||||||||||  |||||| ||||||| ||||||||||||||||||    
T  48499006 aatacatgaggtgtacaatggagtgtagaaataaagagtgttcatgtaacatttt 48499060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 61
Target Start/End: Complemental strand, 14427399 - 14427349
Alignment:
Q  11 catgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 61  Q
    |||||||||||||||  |||||| || ||||||||||||||||||||||||    
T  14427399 catgaggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 14427349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 61
Target Start/End: Original strand, 50448304 - 50448358
Alignment:
Q  7 aatacatgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 61  Q
    ||||||| ||||||||||||  |||||| ||||||| ||||||||||||||||||    
T  50448304 aatacataaggtgtacaatggagtgtagaaataaagagtgttcatgtaacatttt 50448358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 750350 - 750403
Alignment:
Q  8 atacatgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 61  Q
    ||||||| ||||||||||| ||||||||||  ||||||||||| ||||||||||    
T  750350 atacatggggtgtacaatggggtgtaggaaataagggtgttcacgtaacatttt 750403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 63
Target Start/End: Complemental strand, 4401384 - 4401327
Alignment:
Q  7 aatacatgaggtgtacaatgaggtgtaggaat-aaagggtgttcatgtaacatttttc 63  Q
    |||||||| |||||||||||| |||||||||| |||| ||||||||||| ||||||||    
T  4401384 aatacatggggtgtacaatgaagtgtaggaataaaagagtgttcatgtatcatttttc 4401327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 35003341 - 35003282
Alignment:
Q  16 ggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttttcaagataaaattg 75  Q
    ||||||||||  |||||| || |||||||||||||||||||||||| ||| | |||||||    
T  35003341 ggtgtacaatagggtgtatgattaaagggtgttcatgtaacattttccaaaaaaaaattg 35003282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 38335963 - 38335920
Alignment:
Q  18 tgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 61  Q
    |||||||| ||||||| || ||||||||||||||||||||||||    
T  38335963 tgtacaataaggtgtatgattaaagggtgttcatgtaacatttt 38335920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 61
Target Start/End: Original strand, 24769543 - 24769597
Alignment:
Q  7 aatacatgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 61  Q
    |||||||| |||||||||||  |||||| |||||| |||||||||| ||||||||    
T  24769543 aatacatggggtgtacaatggagtgtagaaataaaaggtgttcatgaaacatttt 24769597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 61
Target Start/End: Complemental strand, 44112729 - 44112679
Alignment:
Q  11 catgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 61  Q
    |||| ||||||||||  |||||| || ||||||||||||||||||||||||    
T  44112729 catggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 44112679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 61
Target Start/End: Complemental strand, 48119680 - 48119630
Alignment:
Q  11 catgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 61  Q
    |||| ||||||||||  |||||| || ||||||||||||||||||||||||    
T  48119680 catggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 48119630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 7 - 61
Target Start/End: Complemental strand, 741 - 687
Alignment:
Q  7 aatacatgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 61  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  741 aatacatgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 7 - 61
Target Start/End: Original strand, 26670053 - 26670107
Alignment:
Q  7 aatacatgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 61  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26670053 aatacatgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 26670107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 7 - 61
Target Start/End: Original strand, 7273379 - 7273433
Alignment:
Q  7 aatacatgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 61  Q
    |||||||| |||||||||| |||||||||||||||||||||||||||||||||||    
T  7273379 aatacatggggtgtacaataaggtgtaggaataaagggtgttcatgtaacatttt 7273433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 7 - 63
Target Start/End: Complemental strand, 30736038 - 30735982
Alignment:
Q  7 aatacatgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttttc 63  Q
    |||||||||||||||||||| ||||||||||||||  ||||||||||||||||||||    
T  30736038 aatacatgaggtgtacaatggggtgtaggaataaaaagtgttcatgtaacatttttc 30735982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 61
Target Start/End: Complemental strand, 3213456 - 3213402
Alignment:
Q  7 aatacatgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 61  Q
    |||||||| ||||||||||||| |||| |||||||||||||| ||||||||||||    
T  3213456 aatacatggggtgtacaatgagatgtatgaataaagggtgtttatgtaacatttt 3213402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 61
Target Start/End: Original strand, 9698377 - 9698431
Alignment:
Q  7 aatacatgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 61  Q
    |||||||  ||||||||||| | ||||||||||||||||||||||||||||||||    
T  9698377 aatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacatttt 9698431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 61
Target Start/End: Complemental strand, 26466855 - 26466801
Alignment:
Q  7 aatacatgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 61  Q
    ||||||||  |||||||||| ||||||||||||||||||||| ||||||||||||    
T  26466855 aatacatggagtgtacaatggggtgtaggaataaagggtgtttatgtaacatttt 26466801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 64
Target Start/End: Original strand, 24204031 - 24204088
Alignment:
Q  7 aatacatgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttttca 64  Q
    ||||||||  |||||||||  |||||||||||||| ||||||||||||||||||||||    
T  24204031 aatacatggagtgtacaatagggtgtaggaataaatggtgttcatgtaacatttttca 24204088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 61
Target Start/End: Complemental strand, 30014399 - 30014345
Alignment:
Q  7 aatacatgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 61  Q
    |||||||| | |||| |||| | ||||||||||||||||||||||||||||||||    
T  30014399 aatacatgggatgtataatgggatgtaggaataaagggtgttcatgtaacatttt 30014345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 61
Target Start/End: Complemental strand, 33242459 - 33242405
Alignment:
Q  7 aatacatgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 61  Q
    |||||||| |||||||||| ||||||| || |||| |||||||||||||||||||    
T  33242459 aatacatggggtgtacaataaggtgtatgattaaatggtgttcatgtaacatttt 33242405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 27441587 - 27441540
Alignment:
Q  18 tgtacaatgaggtgtaggaataaagggtgttcatgtaacatttttcaa 65  Q
    ||||||||  |||||| || ||||||||||||||||||||||||||||    
T  27441587 tgtacaatagggtgtatgattaaagggtgttcatgtaacatttttcaa 27441540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 61
Target Start/End: Complemental strand, 7292803 - 7292749
Alignment:
Q  7 aatacatgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 61  Q
    |||||||  |||||| ||||||||||| ||||||| ||||||| |||||||||||    
T  7292803 aatacatagggtgtataatgaggtgtatgaataaatggtgttcttgtaacatttt 7292749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 61
Target Start/End: Complemental strand, 7367605 - 7367551
Alignment:
Q  7 aatacatgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 61  Q
    |||||||| | |||||||||||||||| ||||||| | ||||||| |||||||||    
T  7367605 aatacatgggatgtacaatgaggtgtatgaataaatgatgttcatataacatttt 7367551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 61
Target Start/End: Original strand, 13743265 - 13743319
Alignment:
Q  7 aatacatgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 61  Q
    |||||||| ||||||||||  | |||| ||||||| |||||||||||||||||||    
T  13743265 aatacatggggtgtacaattggatgtatgaataaaaggtgttcatgtaacatttt 13743319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 61
Target Start/End: Original strand, 13748765 - 13748819
Alignment:
Q  7 aatacatgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 61  Q
    |||||||| ||||||||||  | |||| ||||||| |||||||||||||||||||    
T  13748765 aatacatggggtgtacaattggatgtatgaataaaaggtgttcatgtaacatttt 13748819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 61
Target Start/End: Original strand, 21293721 - 21293775
Alignment:
Q  7 aatacatgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 61  Q
    |||||||| |||||||| |||  |||| |||||||||||||| ||||||||||||    
T  21293721 aatacatggggtgtacagtgaaatgtatgaataaagggtgtttatgtaacatttt 21293775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 7 - 61
Target Start/End: Complemental strand, 35069777 - 35069723
Alignment:
Q  7 aatacatgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 61  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  35069777 aatacatgaggtgtacaatgaggtgtaggaataaagagtgttcatgtaacatttt 35069723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 61
Target Start/End: Complemental strand, 5015451 - 5015397
Alignment:
Q  7 aatacatgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 61  Q
    ||||||||||||||||||||  |||||| ||||||| ||||||||||||||||||    
T  5015451 aatacatgaggtgtacaatggagtgtagaaataaagagtgttcatgtaacatttt 5015397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 61
Target Start/End: Original strand, 24001056 - 24001110
Alignment:
Q  7 aatacatgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 61  Q
    |||||||  ||||||||||| | ||||||||||||||||||||||||||||||||    
T  24001056 aatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacatttt 24001110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 61
Target Start/End: Original strand, 42538475 - 42538529
Alignment:
Q  7 aatacatgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 61  Q
    |||||||  ||||||||||| | ||||||||||||||||||||||||||||||||    
T  42538475 aatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacatttt 42538529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 61
Target Start/End: Complemental strand, 42972908 - 42972854
Alignment:
Q  7 aatacatgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 61  Q
    ||||||||||||||||||||  ||||||||||||||| |||||| ||||||||||    
T  42972908 aatacatgaggtgtacaatggagtgtaggaataaaggatgttcaggtaacatttt 42972854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 61
Target Start/End: Original strand, 5194284 - 5194329
Alignment:
Q  16 ggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 61  Q
    |||||||||||||||||| ||||||| |||||||||||||||||||    
T  5194284 ggtgtacaatgaggtgtatgaataaatggtgttcatgtaacatttt 5194329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 61
Target Start/End: Original strand, 5810977 - 5811022
Alignment:
Q  16 ggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 61  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||||    
T  5810977 ggtgtacaatggggtgtaggaataaagggtggtcatgtaacatttt 5811022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 7 - 63
Target Start/End: Complemental strand, 44326234 - 44326178
Alignment:
Q  7 aatacatgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttttc 63  Q
    |||| ||||||||||||||| | |||| |||||||||||||| ||||||||||||||    
T  44326234 aatatatgaggtgtacaatgggatgtatgaataaagggtgtttatgtaacatttttc 44326178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 43317488 - 43317445
Alignment:
Q  18 tgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 61  Q
    |||||||||||||||| ||||||| |||||||||||||||||||    
T  43317488 tgtacaatgaggtgtatgaataaatggtgttcatgtaacatttt 43317445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 65
Target Start/End: Original strand, 44416978 - 44417036
Alignment:
Q  7 aatacatgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttttcaa 65  Q
    |||||||| ||||||||||  ||||||| |||||| | |||||||||||||||||||||    
T  44416978 aatacatggggtgtacaatagggtgtagaaataaatgatgttcatgtaacatttttcaa 44417036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 64
Target Start/End: Complemental strand, 10573805 - 10573748
Alignment:
Q  7 aatacatgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttttca 64  Q
    |||||||| ||||||||||  | |||| |||||||||||||| |||||||||||||||    
T  10573805 aatacatggggtgtacaataggatgtatgaataaagggtgtttatgtaacatttttca 10573748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 63
Target Start/End: Original strand, 16180401 - 16180456
Alignment:
Q  7 aatacatgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttttc 63  Q
    ||||| || ||||||||||| |||||||||||||| |||||| ||||||||||||||    
T  16180401 aatacgtggggtgtacaatg-ggtgtaggaataaatggtgttgatgtaacatttttc 16180456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 63
Target Start/End: Original strand, 43343668 - 43343724
Alignment:
Q  7 aatacatgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttttc 63  Q
    |||||||| ||||||||||  ||||||| |||||| | |||||||||||||||||||    
T  43343668 aatacatggggtgtacaatagggtgtagaaataaatgatgttcatgtaacatttttc 43343724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 30 - 61
Target Start/End: Original strand, 38160661 - 38160692
Alignment:
Q  30 tgtaggaataaagggtgttcatgtaacatttt 61  Q
    ||||||||||||||||||||||||||||||||    
T  38160661 tgtaggaataaagggtgttcatgtaacatttt 38160692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 61
Target Start/End: Complemental strand, 41861730 - 41861676
Alignment:
Q  7 aatacatgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 61  Q
    |||||||  |||||| |||  |||||| |||||||||||||||||||||||||||    
T  41861730 aatacatagggtgtataattgggtgtatgaataaagggtgttcatgtaacatttt 41861676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 61
Target Start/End: Complemental strand, 9216333 - 9216304
Alignment:
Q  32 taggaataaagggtgttcatgtaacatttt 61  Q
    ||||||||||||||||||||||||||||||    
T  9216333 taggaataaagggtgttcatgtaacatttt 9216304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 7 - 63
Target Start/End: Original strand, 4638243 - 4638299
Alignment:
Q  7 aatacatgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttttc 63  Q
    |||| ||| ||||||||||   ||||| ||||||| |||||||||||||||||||||    
T  4638243 aatatatggggtgtacaattgagtgtatgaataaaaggtgttcatgtaacatttttc 4638299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 3e-20; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 7 - 65
Target Start/End: Original strand, 25915031 - 25915089
Alignment:
Q  7 aatacatgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttttcaa 65  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25915031 aatacattgggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttttcaa 25915089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 7 - 61
Target Start/End: Original strand, 33855087 - 33855141
Alignment:
Q  7 aatacatgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 61  Q
    |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||    
T  33855087 aatacatggggtgtacaatggggtgtaggaataaagggtgttcatgtaacatttt 33855141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 61
Target Start/End: Original strand, 2614693 - 2614747
Alignment:
Q  7 aatacatgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 61  Q
    |||||||  ||||||||||| | ||||||||||||||||||||||||||||||||    
T  2614693 aatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacatttt 2614747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 61
Target Start/End: Complemental strand, 18034038 - 18033984
Alignment:
Q  7 aatacatgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 61  Q
    |||||||  |||||||||||  |||||||||||||||||||||||||||||||||    
T  18034038 aatacatagggtgtacaatggagtgtaggaataaagggtgttcatgtaacatttt 18033984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 61
Target Start/End: Complemental strand, 22512361 - 22512307
Alignment:
Q  7 aatacatgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 61  Q
    ||||||||  ||||||||||  |||||||||||||||||||||||||||||||||    
T  22512361 aatacatggagtgtacaatggagtgtaggaataaagggtgttcatgtaacatttt 22512307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 61
Target Start/End: Original strand, 41334707 - 41334761
Alignment:
Q  7 aatacatgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 61  Q
    |||||||  |||||| ||||||||||| |||||||||||||||||||||||||||    
T  41334707 aatacatagggtgtataatgaggtgtatgaataaagggtgttcatgtaacatttt 41334761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 61
Target Start/End: Complemental strand, 7617189 - 7617135
Alignment:
Q  7 aatacatgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 61  Q
    |||||||| |||||| ||||  ||||| |||||||||||||||||||||||||||    
T  7617189 aatacatggggtgtataatggagtgtatgaataaagggtgttcatgtaacatttt 7617135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 61
Target Start/End: Original strand, 32473442 - 32473492
Alignment:
Q  11 catgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 61  Q
    |||| |||||||||| ||||||| || ||||||||||||||||||||||||    
T  32473442 catgtggtgtacaataaggtgtatgattaaagggtgttcatgtaacatttt 32473492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 61
Target Start/End: Complemental strand, 33801525 - 33801471
Alignment:
Q  7 aatacatgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 61  Q
    ||||||||  |||||||||| ||||||| |||||||| |||||||||||||||||    
T  33801525 aatacatggagtgtacaatggggtgtagaaataaaggatgttcatgtaacatttt 33801471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 63
Target Start/End: Complemental strand, 5257051 - 5256995
Alignment:
Q  7 aatacatgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttttc 63  Q
    |||||||| ||||||||||| | |||| ||||||| |||||| ||||||||||||||    
T  5257051 aatacatggggtgtacaatgggatgtatgaataaatggtgtttatgtaacatttttc 5256995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 61
Target Start/End: Complemental strand, 38470635 - 38470581
Alignment:
Q  7 aatacatgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 61  Q
    |||||||| |||||||||||   |||| |||||||||||||| ||||||||||||    
T  38470635 aatacatggggtgtacaatggaatgtatgaataaagggtgtttatgtaacatttt 38470581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 7 - 61
Target Start/End: Complemental strand, 42100744 - 42100690
Alignment:
Q  7 aatacatgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 61  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  42100744 aatacatggggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 42100690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 7 - 64
Target Start/End: Complemental strand, 1078283 - 1078226
Alignment:
Q  7 aatacatgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttttca 64  Q
    ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  1078283 aatacattaggtgtacaatgaggtgcaggaataaagggtgttcatgtaacatttttca 1078226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 7 - 61
Target Start/End: Complemental strand, 25413737 - 25413683
Alignment:
Q  7 aatacatgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 61  Q
    ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||    
T  25413737 aatacataaggtgtacaatggggtgtaggaataaagggtgttcatgtaacatttt 25413683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 7 - 61
Target Start/End: Complemental strand, 46941109 - 46941055
Alignment:
Q  7 aatacatgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 61  Q
    |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  46941109 aatacatggggtgtacaatgagatgtaggaataaagggtgttcatgtaacatttt 46941055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 7 - 61
Target Start/End: Original strand, 47191070 - 47191123
Alignment:
Q  7 aatacatgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 61  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  47191070 aatacatg-ggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 47191123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 7 - 61
Target Start/End: Original strand, 54246192 - 54246246
Alignment:
Q  7 aatacatgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 61  Q
    |||||||  ||||||||||| ||||||||||||||||||||||||||||||||||    
T  54246192 aatacatagggtgtacaatggggtgtaggaataaagggtgttcatgtaacatttt 54246246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 7 - 63
Target Start/End: Complemental strand, 27748619 - 27748563
Alignment:
Q  7 aatacatgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttttc 63  Q
    ||||||| ||||||| ||||||||||| ||||||| |||||||||||||||||||||    
T  27748619 aatacataaggtgtataatgaggtgtatgaataaaaggtgttcatgtaacatttttc 27748563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 61
Target Start/End: Complemental strand, 40808921 - 40808867
Alignment:
Q  7 aatacatgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 61  Q
    |||||||| ||||||||||| |||||||||||||| |||||| ||||||||||||    
T  40808921 aatacatggggtgtacaatggggtgtaggaataaatggtgttgatgtaacatttt 40808867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 61
Target Start/End: Complemental strand, 54237152 - 54237098
Alignment:
Q  7 aatacatgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 61  Q
    |||||||  ||||||||||| | ||||||||||||||||||||||||||||||||    
T  54237152 aatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacatttt 54237098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 61
Target Start/End: Original strand, 4190309 - 4190363
Alignment:
Q  7 aatacatgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 61  Q
    ||||||| |||||||||||  |||||| || ||||||||||||||||||||||||    
T  4190309 aatacataaggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 4190363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 61
Target Start/End: Original strand, 24688446 - 24688500
Alignment:
Q  7 aatacatgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 61  Q
    |||||||  |||||||||||  |||||| ||||||||||||||||||||||||||    
T  24688446 aatacatagggtgtacaatggagtgtagaaataaagggtgttcatgtaacatttt 24688500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 61
Target Start/End: Original strand, 42394463 - 42394517
Alignment:
Q  7 aatacatgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 61  Q
    |||||||  |||||||||||   ||||||||||||||||||||||||||||||||    
T  42394463 aatacatagggtgtacaatggaatgtaggaataaagggtgttcatgtaacatttt 42394517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 61
Target Start/End: Original strand, 45126972 - 45127026
Alignment:
Q  7 aatacatgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 61  Q
    |||||||| ||||||||||| | |||| |||||||||||||| ||||||||||||    
T  45126972 aatacatggggtgtacaatgggatgtatgaataaagggtgtttatgtaacatttt 45127026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 29558287 - 29558330
Alignment:
Q  16 ggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatt 59  Q
    ||||||||||||| |||| ||||||||||||||||| |||||||    
T  29558287 ggtgtacaatgagatgtatgaataaagggtgttcatataacatt 29558330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 61
Target Start/End: Complemental strand, 25996324 - 25996270
Alignment:
Q  7 aatacatgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 61  Q
    |||| ||| |||||||||| || |||| || ||||||||||||||||||||||||    
T  25996324 aatatatggggtgtacaataagatgtatgattaaagggtgttcatgtaacatttt 25996270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 61
Target Start/End: Complemental strand, 34791881 - 34791831
Alignment:
Q  11 catgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 61  Q
    |||||||| ||||||  |||||| || ||||||||||||||||||||||||    
T  34791881 catgaggtttacaatatggtgtatgattaaagggtgttcatgtaacatttt 34791831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 61
Target Start/End: Original strand, 53273728 - 53273782
Alignment:
Q  7 aatacatgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 61  Q
    |||||||| | ||||||||||||| |||||||||| | ||||||| |||||||||    
T  53273728 aatacatgggatgtacaatgaggtataggaataaatgatgttcatataacatttt 53273782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 61
Target Start/End: Complemental strand, 36150177 - 36150132
Alignment:
Q  16 ggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 61  Q
    |||||| |||| |||||| ||||||||||| |||||||||||||||    
T  36150177 ggtgtataatggggtgtatgaataaagggtattcatgtaacatttt 36150132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 53581913 - 53581958
Alignment:
Q  18 tgtacaatgaggtgtaggaataaagggtgttcatgtaacatttttc 63  Q
    |||||||||  ||||| |||||||| ||||||||||||||||||||    
T  53581913 tgtacaatggagtgtatgaataaagagtgttcatgtaacatttttc 53581958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 7 - 63
Target Start/End: Original strand, 30912606 - 30912662
Alignment:
Q  7 aatacatgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttttc 63  Q
    ||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||    
T  30912606 aatacatgaagtgtacaatggggtgtaggaataaagggtgttcatgtaacatttttc 30912662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 7 - 63
Target Start/End: Complemental strand, 42295251 - 42295195
Alignment:
Q  7 aatacatgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttttc 63  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  42295251 aatacatggagtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttttc 42295195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 7 - 63
Target Start/End: Complemental strand, 42699313 - 42699257
Alignment:
Q  7 aatacatgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttttc 63  Q
    ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  42699313 aatacataaggtgtacaatggggtgtaggaataaagggtgttcatgtaacatttttc 42699257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 7 - 61
Target Start/End: Complemental strand, 29705418 - 29705364
Alignment:
Q  7 aatacatgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 61  Q
    |||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||    
T  29705418 aatacatggggtgtacaatggggtgtagaaataaagggtgttcatgtaacatttt 29705364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 61
Target Start/End: Complemental strand, 2547052 - 2546998
Alignment:
Q  7 aatacatgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 61  Q
    ||||||||||||||||||||  |||||| ||||||| ||||||||||||||||||    
T  2547052 aatacatgaggtgtacaatggagtgtagaaataaagagtgttcatgtaacatttt 2546998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 61
Target Start/End: Complemental strand, 11582822 - 11582768
Alignment:
Q  7 aatacatgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 61  Q
    |||||||  ||||||||||| | ||||||||||||||||||||||||||||||||    
T  11582822 aatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacatttt 11582768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 61
Target Start/End: Original strand, 36743527 - 36743581
Alignment:
Q  7 aatacatgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 61  Q
    |||||||  ||||||||||| | ||||||||||||||||||||||||||||||||    
T  36743527 aatacatagggtgtacaatgggatgtaggaataaagggtgttcatgtaacatttt 36743581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 7 - 63
Target Start/End: Complemental strand, 20148816 - 20148760
Alignment:
Q  7 aatacatgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttttc 63  Q
    |||| ||||||||||||||| | |||| |||||||||||||| ||||||||||||||    
T  20148816 aatatatgaggtgtacaatgggatgtatgaataaagggtgtttatgtaacatttttc 20148760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 61
Target Start/End: Complemental strand, 28977183 - 28977148
Alignment:
Q  26 gaggtgtaggaataaagggtgttcatgtaacatttt 61  Q
    ||||||||||||||||||||||||||||||||||||    
T  28977183 gaggtgtaggaataaagggtgttcatgtaacatttt 28977148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 63
Target Start/End: Original strand, 33630046 - 33630093
Alignment:
Q  16 ggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttttc 63  Q
    |||||||||||||||||| || |||||||||||| |||||||||||||    
T  33630046 ggtgtacaatgaggtgtatgattaaagggtgttcgtgtaacatttttc 33630093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 61
Target Start/End: Original strand, 2166007 - 2166061
Alignment:
Q  7 aatacatgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 61  Q
    |||||||| ||| ||||||| |||||||||||||| ||||||||||||| |||||    
T  2166007 aatacatggggtatacaatggggtgtaggaataaatggtgttcatgtaatatttt 2166061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 61
Target Start/End: Original strand, 30660786 - 30660840
Alignment:
Q  7 aatacatgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 61  Q
    |||||||  ||||||||||| | ||||| ||||||||||||||||||||||||||    
T  30660786 aatacatagggtgtacaatgggatgtagaaataaagggtgttcatgtaacatttt 30660840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 61
Target Start/End: Complemental strand, 45397372 - 45397318
Alignment:
Q  7 aatacatgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 61  Q
    |||||||  |||||| |||| ||||||||||||||||||||||| ||||||||||    
T  45397372 aatacatagggtgtagaatggggtgtaggaataaagggtgttcacgtaacatttt 45397318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 63
Target Start/End: Original strand, 29800994 - 29801050
Alignment:
Q  7 aatacatgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttttc 63  Q
    |||||||| ||||||||||| | |||| ||||||| |||||| ||||||||||||||    
T  29800994 aatacatggggtgtacaatgggatgtatgaataaatggtgtttatgtaacatttttc 29801050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 61
Target Start/End: Original strand, 42197489 - 42197533
Alignment:
Q  17 gtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 61  Q
    |||| ||||| |||||||||||||| |||||||||||||||||||    
T  42197489 gtgtgcaatggggtgtaggaataaatggtgttcatgtaacatttt 42197533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 5754948 - 5754905
Alignment:
Q  18 tgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 61  Q
    ||||||||| | |||||||||||| |||||||||||||||||||    
T  5754948 tgtacaatgggatgtaggaataaaaggtgttcatgtaacatttt 5754905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 61
Target Start/End: Complemental strand, 35181568 - 35181518
Alignment:
Q  11 catgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 61  Q
    |||| ||||||||||  |||||| || ||||||||||||||||||||||||    
T  35181568 catggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 35181518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 64
Target Start/End: Complemental strand, 26125691 - 26125634
Alignment:
Q  7 aatacatgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttttca 64  Q
    |||||||  |||||||||||   |||| |||||||||||||| |||||||||||||||    
T  26125691 aatacatagggtgtacaatggaatgtatgaataaagggtgtttatgtaacatttttca 26125634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 7e-18; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 7 - 61
Target Start/End: Original strand, 1771310 - 1771364
Alignment:
Q  7 aatacatgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 61  Q
    |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||    
T  1771310 aatacatggggtgtacaatggggtgtaggaataaagggtgttcatgtaacatttt 1771364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 7 - 63
Target Start/End: Original strand, 43514730 - 43514786
Alignment:
Q  7 aatacatgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttttc 63  Q
    ||||||||| ||||||||||  |||||||||||||||||||||||||||||||||||    
T  43514730 aatacatgaagtgtacaatggagtgtaggaataaagggtgttcatgtaacatttttc 43514786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 7 - 65
Target Start/End: Complemental strand, 39631157 - 39631098
Alignment:
Q  7 aatacatgaggtgtacaatgaggtgtaggaat-aaagggtgttcatgtaacatttttcaa 65  Q
    |||||||||||||||||||||||||||||||| |||||| ||||||||| ||||||||||    
T  39631157 aatacatgaggtgtacaatgaggtgtaggaataaaagggggttcatgtatcatttttcaa 39631098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 7 - 61
Target Start/End: Complemental strand, 27550365 - 27550311
Alignment:
Q  7 aatacatgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 61  Q
    ||||||||||||||||||||  |||||| ||||||||||||||||||||||||||    
T  27550365 aatacatgaggtgtacaatggagtgtagaaataaagggtgttcatgtaacatttt 27550311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 11 - 61
Target Start/End: Complemental strand, 28988525 - 28988475
Alignment:
Q  11 catgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 61  Q
    |||| |||||||||||||||||| |||||||||||||||||||||||||||    
T  28988525 catggggtgtacaatgaggtgtatgaataaagggtgttcatgtaacatttt 28988475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 35017788 - 35017735
Alignment:
Q  8 atacatgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 61  Q
    ||||||| ||||||||||||| | ||||||||||||||||||||||||||||||    
T  35017788 atacatggggtgtacaatgagatataggaataaagggtgttcatgtaacatttt 35017735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 61
Target Start/End: Original strand, 27316757 - 27316811
Alignment:
Q  7 aatacatgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 61  Q
    |||||||| |||||| ||||||||||||||||||||||||||| | |||||||||    
T  27316757 aatacatggggtgtataatgaggtgtaggaataaagggtgttcgtttaacatttt 27316811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 61
Target Start/End: Complemental strand, 33703197 - 33703143
Alignment:
Q  7 aatacatgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 61  Q
    |||||||| |||||||||| || ||||| ||||||||||||||||||||||||||    
T  33703197 aatacatggggtgtacaataagatgtagaaataaagggtgttcatgtaacatttt 33703143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 64
Target Start/End: Original strand, 43949845 - 43949903
Alignment:
Q  7 aatacatgaggtgtacaatgaggtgtaggaat-aaagggtgttcatgtaacatttttca 64  Q
    |||||||| |||||||||||||||| |||||| |||||||||||||||| |||||||||    
T  43949845 aatacatggggtgtacaatgaggtgcaggaataaaagggtgttcatgtatcatttttca 43949903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 61
Target Start/End: Complemental strand, 41878453 - 41878408
Alignment:
Q  16 ggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 61  Q
    |||||||||||||||||| |||||||| ||||||||||||||||||    
T  41878453 ggtgtacaatgaggtgtatgaataaagagtgttcatgtaacatttt 41878408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 61
Target Start/End: Complemental strand, 12497012 - 12496958
Alignment:
Q  7 aatacatgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 61  Q
    |||||||| | |||||||||  ||||||||||||||||||||||| |||||||||    
T  12497012 aatacatgggatgtacaatggagtgtaggaataaagggtgttcatataacatttt 12496958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 61
Target Start/End: Complemental strand, 25051749 - 25051695
Alignment:
Q  7 aatacatgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 61  Q
    |||||||  ||||||||||| ||||||||||||||| |||||||||| |||||||    
T  25051749 aatacatagggtgtacaatggggtgtaggaataaagtgtgttcatgtgacatttt 25051695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 63
Target Start/End: Original strand, 3756294 - 3756346
Alignment:
Q  11 catgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttttc 63  Q
    |||| ||||||||||  |||||| || ||||||||||||||||||||||||||    
T  3756294 catggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttttc 3756346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 63
Target Start/End: Original strand, 27893886 - 27893942
Alignment:
Q  7 aatacatgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttttc 63  Q
    |||||||| ||||||||||| | |||| ||||||| |||||| ||||||||||||||    
T  27893886 aatacatggggtgtacaatgggatgtatgaataaatggtgtttatgtaacatttttc 27893942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 28982877 - 28982920
Alignment:
Q  18 tgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 61  Q
    ||||||||  ||||||| ||||||||||||||||||||||||||    
T  28982877 tgtacaatagggtgtagaaataaagggtgttcatgtaacatttt 28982920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 23204833 - 23204875
Alignment:
Q  18 tgtacaatgaggtgtaggaataaagggtgttcatgtaacattt 60  Q
    ||||||||| | ||||||||||||| |||||||||||||||||    
T  23204833 tgtacaatgggatgtaggaataaagagtgttcatgtaacattt 23204875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 61
Target Start/End: Complemental strand, 27864620 - 27864566
Alignment:
Q  7 aatacatgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 61  Q
    |||||||| ||||||||||| | |||| ||||||| |||||| ||||||||||||    
T  27864620 aatacatggggtgtacaatgggatgtatgaataaatggtgtttatgtaacatttt 27864566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 65
Target Start/End: Original strand, 41327595 - 41327645
Alignment:
Q  15 aggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttttcaa 65  Q
    |||||||||||| |||||  |||||||||||||  ||||||||||||||||    
T  41327595 aggtgtacaatggggtgtgtgaataaagggtgtctatgtaacatttttcaa 41327645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 43735787 - 43735741
Alignment:
Q  18 tgtacaatgaggtgtaggaataaagggtgttcatgtaacatttttca 64  Q
    |||| |||||| |||||||||||||| ||||||||||| ||||||||    
T  43735787 tgtataatgagatgtaggaataaaggatgttcatgtaatatttttca 43735741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 61
Target Start/End: Original strand, 55966390 - 55966444
Alignment:
Q  7 aatacatgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 61  Q
    |||||||| | ||||||||| | |||| |||||||||||||| ||||||||||||    
T  55966390 aatacatgggatgtacaatgggatgtatgaataaagggtgtttatgtaacatttt 55966444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 61
Target Start/End: Complemental strand, 712007 - 711962
Alignment:
Q  16 ggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 61  Q
    ||||||||||  |||||| || ||||||||||||||||||||||||    
T  712007 ggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 711962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 61
Target Start/End: Complemental strand, 23036027 - 23035982
Alignment:
Q  16 ggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 61  Q
    ||||||||||  ||||||||||||||||  ||||||||||||||||    
T  23036027 ggtgtacaatagggtgtaggaataaaggaggttcatgtaacatttt 23035982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 63
Target Start/End: Original strand, 46412519 - 46412559
Alignment:
Q  23 aatgaggtgtaggaataaagggtgttcatgtaacatttttc 63  Q
    ||||| ||||||||||||| |||||||| ||||||||||||    
T  46412519 aatgaagtgtaggaataaaaggtgttcacgtaacatttttc 46412559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 7 - 61
Target Start/End: Complemental strand, 1750470 - 1750416
Alignment:
Q  7 aatacatgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 61  Q
    |||||||  ||||||||||| ||||||||||||||||||||||||||||||||||    
T  1750470 aatacatagggtgtacaatggggtgtaggaataaagggtgttcatgtaacatttt 1750416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 7 - 61
Target Start/End: Complemental strand, 16096803 - 16096749
Alignment:
Q  7 aatacatgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 61  Q
    |||||||| |||||| |||| ||||||||||||||||||||||||||||||||||    
T  16096803 aatacatggggtgtataatggggtgtaggaataaagggtgttcatgtaacatttt 16096749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 7 - 63
Target Start/End: Complemental strand, 33229358 - 33229301
Alignment:
Q  7 aatacatgaggtgtacaatgaggtgtaggaat-aaagggtgttcatgtaacatttttc 63  Q
    |||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||    
T  33229358 aatacatggggtgtacaatgaggtgtaggaataaaagggtgttcatgtatcatttttc 33229301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 61
Target Start/End: Original strand, 12302297 - 12302351
Alignment:
Q  7 aatacatgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 61  Q
    |||||||  ||||||||||| ||||||| ||||||||||||||||||||||||||    
T  12302297 aatacatagggtgtacaatggggtgtagaaataaagggtgttcatgtaacatttt 12302351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 61
Target Start/End: Complemental strand, 30838688 - 30838634
Alignment:
Q  7 aatacatgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 61  Q
    |||||||| |||||||||| || ||||| ||||||||||||||||||||||||||    
T  30838688 aatacatggggtgtacaataagatgtagaaataaagggtgttcatgtaacatttt 30838634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 61
Target Start/End: Original strand, 34817824 - 34817874
Alignment:
Q  11 catgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 61  Q
    |||| |||||||||||||||||  |||||||||||||||||||||||||||    
T  34817824 catggggtgtacaatgaggtgtgtgaataaagggtgttcatgtaacatttt 34817874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 73
Target Start/End: Original strand, 41282022 - 41282084
Alignment:
Q  11 catgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttttcaagataaaat 73  Q
    |||| ||||||||||  |||||| || |||||||||||||||||||||||||||||| |||||    
T  41282022 catggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttttcaagaaaaaat 41282084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 63
Target Start/End: Original strand, 43490455 - 43490501
Alignment:
Q  17 gtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttttc 63  Q
    |||||||||| | ||||||||||||||||||||||||||||||||||    
T  43490455 gtgtacaatgggatgtaggaataaagggtgttcatgtaacatttttc 43490501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 61
Target Start/End: Original strand, 4764770 - 4764824
Alignment:
Q  7 aatacatgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 61  Q
    |||||||| ||||||||||  |||||||||||||| |||||| ||||||||||||    
T  4764770 aatacatggggtgtacaatagggtgtaggaataaatggtgttgatgtaacatttt 4764824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 61
Target Start/End: Original strand, 12415508 - 12415558
Alignment:
Q  11 catgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 61  Q
    |||| |||||||||| ||||||| || ||||||||||||||||||||||||    
T  12415508 catggggtgtacaataaggtgtatgattaaagggtgttcatgtaacatttt 12415558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 61
Target Start/End: Original strand, 12427568 - 12427618
Alignment:
Q  11 catgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 61  Q
    |||| |||||||||| ||||||| || ||||||||||||||||||||||||    
T  12427568 catggggtgtacaataaggtgtatgattaaagggtgttcatgtaacatttt 12427618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 61
Target Start/End: Complemental strand, 18491757 - 18491707
Alignment:
Q  11 catgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 61  Q
    |||||||||||||||  |||||| || ||||||||||||||||||||||||    
T  18491757 catgaggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 18491707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 61
Target Start/End: Complemental strand, 19047213 - 19047159
Alignment:
Q  7 aatacatgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 61  Q
    |||||||  |||||||||||   ||||||||||||||||||||||||||||||||    
T  19047213 aatacatagggtgtacaatggaatgtaggaataaagggtgttcatgtaacatttt 19047159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 61
Target Start/End: Original strand, 43335807 - 43335861
Alignment:
Q  7 aatacatgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 61  Q
    |||||||| | |||||||||||||||||||||||| | ||||||| |||||||||    
T  43335807 aatacatgggatgtacaatgaggtgtaggaataaatgatgttcatataacatttt 43335861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 28 - 61
Target Start/End: Original strand, 42849911 - 42849944
Alignment:
Q  28 ggtgtaggaataaagggtgttcatgtaacatttt 61  Q
    ||||||||||||||||||||||||||||||||||    
T  42849911 ggtgtaggaataaagggtgttcatgtaacatttt 42849944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 7070459 - 7070415
Alignment:
Q  20 tacaatgaggtgtaggaataaagggtgttcatgtaacatttttca 64  Q
    ||||||| | |||| ||||||||||||||||||||||||||||||    
T  7070459 tacaatgggatgtatgaataaagggtgttcatgtaacatttttca 7070415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 63
Target Start/End: Original strand, 11825702 - 11825754
Alignment:
Q  11 catgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttttc 63  Q
    |||| ||||||||||  |||||| || ||||||||||||||||||||||||||    
T  11825702 catggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttttc 11825754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 61
Target Start/End: Original strand, 966882 - 966932
Alignment:
Q  11 catgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 61  Q
    |||| ||||||||||  |||||| || ||||||||||||||||||||||||    
T  966882 catggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 966932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 61
Target Start/End: Complemental strand, 43114609 - 43114559
Alignment:
Q  11 catgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 61  Q
    |||| ||||||||||  |||||| || ||||||||||||||||||||||||    
T  43114609 catggggtgtacaatagggtgtatgattaaagggtgttcatgtaacatttt 43114559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 63
Target Start/End: Original strand, 8896655 - 8896683
Alignment:
Q  35 gaataaagggtgttcatgtaacatttttc 63  Q
    |||||||||||||||||||||||||||||    
T  8896655 gaataaagggtgttcatgtaacatttttc 8896683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 14243 - 14286
Alignment:
Q  18 tgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 61  Q
    ||||||||| ||||||| ||||||||||||||||||||||||||    
T  14243 tgtacaatggggtgtagaaataaagggtgttcatgtaacatttt 14286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 24571 - 24614
Alignment:
Q  18 tgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 61  Q
    ||||||||| ||||||| ||||||||||||||||||||||||||    
T  24571 tgtacaatggggtgtagaaataaagggtgttcatgtaacatttt 24614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 61
Target Start/End: Original strand, 23465 - 23519
Alignment:
Q  7 aatacatgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 61  Q
    |||||||| | |||||||||  ||||||||||||||||||||||| |||||||||    
T  23465 aatacatgggatgtacaatggagtgtaggaataaagggtgttcatataacatttt 23519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 61
Target Start/End: Complemental strand, 112711 - 112657
Alignment:
Q  7 aatacatgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 61  Q
    |||||||  |||||||||||   ||||||||||||||||||||||||||||||||    
T  112711 aatacatagggtgtacaatggaatgtaggaataaagggtgttcatgtaacatttt 112657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 45774 - 45821
Alignment:
Q  18 tgtacaatgaggtgtaggaataaagggtgttcatgtaacatttttcaa 65  Q
    ||||||||  |||||| || ||||||||||||||||||||||||||||    
T  45774 tgtacaatagggtgtatgattaaagggtgttcatgtaacatttttcaa 45821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0385 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 61
Target Start/End: Complemental strand, 11307 - 11253
Alignment:
Q  7 aatacatgaggtgtacaatgaggtgtaggaataaagggtgttcatgtaacatttt 61  Q
    |||| ||| ||||||||||| |||||| |||||||| |||||||||| |||||||    
T  11307 aatatatggggtgtacaatggggtgtatgaataaagtgtgttcatgtgacatttt 11253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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