View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11386A_low_216 (Length: 278)
Name: NF11386A_low_216
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386A_low_216 |
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Alignment Details
Target: chr6 (Bit Score: 204; Significance: 1e-111; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 22 - 257
Target Start/End: Complemental strand, 2619819 - 2619584
Alignment:
| Q |
22 |
tcacatttgataaaccagctcctaaagccctgccacataagaaaaaatatataattaacaactttgtagcaccgacacgtctgattgaagatgtgtccag |
121 |
Q |
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| T |
2619819 |
tcacatttgatagaccagctcctaaagccctgccacataggaaaaaatatataattaacaactttgtagcatcgacacttctgattgaaggcgtgtccag |
2619720 |
T |
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| Q |
122 |
tgtttgtcatgtgtcagtgtcgtcgacacatgtgattacatgaaaatgattcattttctctcaaattgatacatgtgtcatcgatctgtctgtgttagtt |
221 |
Q |
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| T |
2619719 |
tgtttgtcatgtgtcagtgtcgtcgacacatgtgattacattaaaatgattcattttctctcaaattgatacatgtgtcattgatctgtctgtgttagtt |
2619620 |
T |
|
| Q |
222 |
tcatgacagtgtttgtacttaacaaattaacaaaaa |
257 |
Q |
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| T |
2619619 |
tcatgacagtgtttgtacttaacaaattaacaaaaa |
2619584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 22 - 237
Target Start/End: Complemental strand, 2586129 - 2585914
Alignment:
| Q |
22 |
tcacatttgataaaccagctcctaaagccctgccacataagaaaaa-atatataattaacaactttgtagcaccgacacgtctgattgaagatgtgtcca |
120 |
Q |
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| T |
2586129 |
tcacatttgacataccagctcctaaagccctgccacataagaaaaatatatataatcaacaactttgtagaaccgacacttctgattaatggtgtgtcca |
2586030 |
T |
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| Q |
121 |
gtgtttgtcatgtgtcagtgt---cgtcgacacatgtgattacatgaaaatgattcattttctctcaaattgatacatgtgtcatcgatctgtctgtgtt |
217 |
Q |
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| T |
2586029 |
gtgtctgttacgtgtcactgtctacgctgacacatgtgattactttaaaatgattcattt--tctcaaattgat-tatgtgt-gtcgatttgtctgtgtt |
2585934 |
T |
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| Q |
218 |
agtttcatgacagtgtttgt |
237 |
Q |
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| T |
2585933 |
attttcgtgtaagtgtttgt |
2585914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 22 - 98
Target Start/End: Original strand, 2677765 - 2677842
Alignment:
| Q |
22 |
tcacatttgataaaccagctcctaaagccctgccacataagaaaaaa-tatataattaacaactttgtagcaccgaca |
98 |
Q |
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| T |
2677765 |
tcacatttgataaaccagctcctaaagccctaccacataagaaaaaattatataattaacaactatttagcaacgaca |
2677842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 22 - 98
Target Start/End: Original strand, 2645327 - 2645403
Alignment:
| Q |
22 |
tcacatttgataaaccagctcctaaagccctgccacataagaaaaaatatataattaacaactttgtagcaccgaca |
98 |
Q |
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| T |
2645327 |
tcacatttgataaaacagctcctaaagtcctgtcacataaggaaaaatatataattaacaacattataacaccgaca |
2645403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 22 - 79
Target Start/End: Original strand, 2600495 - 2600552
Alignment:
| Q |
22 |
tcacatttgataaaccagctcctaaagccctgccacataagaaaaaatatataattaa |
79 |
Q |
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| T |
2600495 |
tcacatttgataaaccagctccgaaagccctatctcataagggaaaatatttaattaa |
2600552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 118
Target Start/End: Complemental strand, 36398559 - 36398525
Alignment:
| Q |
84 |
tttgtagcaccgacacgtctgattgaagatgtgtc |
118 |
Q |
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| T |
36398559 |
tttgtagcaccgacacttctgattgaagatgtgtc |
36398525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 138
Target Start/End: Complemental strand, 8203940 - 8203892
Alignment:
| Q |
90 |
gcaccgacacgtctgattgaagatgtgtccagtgtttgtcatgtgtcag |
138 |
Q |
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| T |
8203940 |
gcactgacacttctgacagaaggtgtgtccagtgtttgtcatgtgtcag |
8203892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 142
Target Start/End: Complemental strand, 16771345 - 16771289
Alignment:
| Q |
86 |
tgtagcaccgacacgtctgattgaagatgtgtccagtgtttgtcatgtgtcagtgtc |
142 |
Q |
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| T |
16771345 |
tgtagcatcgacacttctgattgaaggtgtgtccagtgttcaacatgtgtctgtgtc |
16771289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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