View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11386A_low_22 (Length: 456)
Name: NF11386A_low_22
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386A_low_22 |
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Alignment Details
Target: chr8 (Bit Score: 436; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 11 - 450
Target Start/End: Complemental strand, 45025305 - 45024866
Alignment:
| Q |
11 |
tgaaatcaacaacacattgacccaataacatatagaattggatatagctgcccctttacttccaagcttaaattcaaaaaccaaaagccaacacaaaagg |
110 |
Q |
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| T |
45025305 |
tgaaatcaacaacacattgacccaataacatatagaattggatatagctgcccctttacttccaagcttaaattcaaaaaccaaaagccaacacaaaagg |
45025206 |
T |
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| Q |
111 |
gtatgaagcaaagctgcaatcccagaagttatcaccattgggaggacaatgttttgtgtttgcaagaacttgagaatgcactggagaggaccatatgcga |
210 |
Q |
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| T |
45025205 |
gtatgaagcaaagctgcaatcccagaagttatcaccattgggaggacaatgttttgtgtttgcaagaacttgagaatgcactggagaggaccatatgcga |
45025106 |
T |
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| Q |
211 |
acaaactcggtatcagaaacaacgcgtatgaaccagcttccttggatatggctttgtcctgatgcataacaactaaaatttgttttgtatttgcccatat |
310 |
Q |
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| T |
45025105 |
acaaactcggtatcagaaacaacgcgtatgaaccagcttccttggatatggctttgtcctgatgcataacaactaaaatttgttttgtatttgcccatat |
45025006 |
T |
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| Q |
311 |
gatggcaaggaatacactcacaattgaaaccacaatcatggctctttgcatgtgtattccaagcatatggtactgttctgctccatttgattgaccacaa |
410 |
Q |
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| T |
45025005 |
gatggcaaggaatacactcacaattgaaaccacaatcatggctctttgcatgtgtattccaagcatatggtactgttctgctccatttgattgaccacaa |
45024906 |
T |
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| Q |
411 |
aatgtgtccagtgcactagtaattcccatctggtcaaaac |
450 |
Q |
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| T |
45024905 |
aatgtgtccagtgcactagtaattcccatctgatcaaaac |
45024866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 348 - 426
Target Start/End: Original strand, 30471780 - 30471858
Alignment:
| Q |
348 |
atggctctttgcatgtgtattccaagcatatggtactgttctgctccatttgattgaccacaaaatgtgtccagtgcac |
426 |
Q |
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| T |
30471780 |
atggctctctgcaagtgtattcccaccatatggtatttttgtgctccatatgattgaccacaaaatgtttctagtgcac |
30471858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 365 - 427
Target Start/End: Original strand, 30437691 - 30437753
Alignment:
| Q |
365 |
tattccaagcatatggtactgttctgctccatttgattgaccacaaaatgtgtccagtgcact |
427 |
Q |
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| T |
30437691 |
tattccaaccatatgatactgttgagctccatatgcttgaccacaaaatgtgtctagtgcact |
30437753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 347 - 427
Target Start/End: Original strand, 30381373 - 30381453
Alignment:
| Q |
347 |
catggctctttgcatgtgtattccaagcatatggtactgttctgctccatttgattgaccacaaaatgtgtccagtgcact |
427 |
Q |
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| T |
30381373 |
catggctctttgtgtgtatatgccaaccatatgatattgctttgctccatatgcttgaccacaaaatgtgtctagtgcact |
30381453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 420
Target Start/End: Original strand, 30502739 - 30502812
Alignment:
| Q |
347 |
catggctctttgcatgtgtattccaagcatatggtactgttctgctccatttgattgaccacaaaatgtgtcca |
420 |
Q |
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| T |
30502739 |
catggctctttgcatgtgtatgcctagcatgcggtactgctttgcgccatatgactggccacataatgtgtcca |
30502812 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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