View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11386A_low_222 (Length: 276)

Name: NF11386A_low_222
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11386A_low_222
NF11386A_low_222
[»] chr2 (3 HSPs)
chr2 (81-238)||(1347045-1347202)
chr2 (13-54)||(29360991-29361032)
chr2 (13-54)||(34036341-34036382)
[»] chr4 (1 HSPs)
chr4 (94-167)||(16639525-16639598)
[»] chr7 (5 HSPs)
chr7 (13-54)||(43073737-43073778)
chr7 (13-54)||(46578856-46578897)
chr7 (102-148)||(48260551-48260597)
chr7 (10-55)||(27118844-27118889)
chr7 (13-49)||(42122145-42122181)
[»] chr5 (3 HSPs)
chr5 (13-56)||(27807738-27807781)
chr5 (13-56)||(28024813-28024856)
chr5 (13-55)||(35080500-35080542)
[»] chr1 (1 HSPs)
chr1 (11-54)||(50776402-50776445)
[»] chr3 (2 HSPs)
chr3 (13-55)||(41936151-41936193)
chr3 (13-54)||(33839796-33839837)
[»] chr8 (2 HSPs)
chr8 (13-54)||(7427167-7427208)
chr8 (13-54)||(31602709-31602750)
[»] chr6 (1 HSPs)
chr6 (11-56)||(32588917-32588962)


Alignment Details
Target: chr2 (Bit Score: 131; Significance: 5e-68; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 81 - 238
Target Start/End: Original strand, 1347045 - 1347202
Alignment:
Q  81 ggctatagtaccatatatctattttggaagtaacaatgtttcagcaaaaataggagtggcctagtggtgaaagttatgaagggttgttgtcaggtagtcg 180  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  1347045 ggctatagtaccatatatctattttggaagtaacaatgtt-cagcaaaaataggagtggcctagtggtgaaagttatgaagggttgttgtcaggtagttg 1347143  T
Q  181 gtttgaagtcataacagcagttagtgcaattgtc-gagatatgagactgagtcttcctt 238  Q
    ||||||||||||||| |||||||||||||||||| ||||| ||||||||||||||||||    
T  1347144 gtttgaagtcataactgcagttagtgcaattgtctgagatgtgagactgagtcttcctt 1347202  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 54
Target Start/End: Original strand, 29360991 - 29361032
Alignment:
Q  13 tgaaatacccaaaacgtcatataatttgggagggagtgagta 54  Q
    |||||| |||||||||||||||||||||||| |||| |||||    
T  29360991 tgaaatgcccaaaacgtcatataatttgggacggagggagta 29361032  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 54
Target Start/End: Original strand, 34036341 - 34036382
Alignment:
Q  13 tgaaatacccaaaacgtcatataatttgggagggagtgagta 54  Q
    |||||| |||||||||||||||||||||||| |||| |||||    
T  34036341 tgaaatgcccaaaacgtcatataatttgggacggagggagta 34036382  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 94 - 167
Target Start/End: Original strand, 16639525 - 16639598
Alignment:
Q  94 tatatctattttggaagtaacaatgtttcagcaaaaataggagtggcctagtggtgaaagttatgaagggttgt 167  Q
    ||||||||||||||||| |||||| ||||| |||||||| |||| |||||||  ||||| |||||||| |||||    
T  16639525 tatatctattttggaagcaacaatatttcaacaaaaataagagttgcctagtattgaaaattatgaagtgttgt 16639598  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 54
Target Start/End: Complemental strand, 43073778 - 43073737
Alignment:
Q  13 tgaaatacccaaaacgtcatataatttgggagggagtgagta 54  Q
    ||||||||||||||||||||||||||||||| |||| |||||    
T  43073778 tgaaatacccaaaacgtcatataatttgggacggagggagta 43073737  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 13 - 54
Target Start/End: Original strand, 46578856 - 46578897
Alignment:
Q  13 tgaaatacccaaaacgtcatataatttgggagggagtgagta 54  Q
    ||||||||||||||||||||| ||||||||| ||||||||||    
T  46578856 tgaaatacccaaaacgtcatacaatttgggacggagtgagta 46578897  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 148
Target Start/End: Complemental strand, 48260597 - 48260551
Alignment:
Q  102 ttttggaagtaacaatgtttcagcaaaaataggagtggcctagtggt 148  Q
    |||||||||||||||| ||||| ||||||||| |||||| |||||||    
T  48260597 ttttggaagtaacaatatttcaacaaaaatagaagtggcatagtggt 48260551  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 10 - 55
Target Start/End: Complemental strand, 27118889 - 27118844
Alignment:
Q  10 atatgaaatacccaaaacgtcatataatttgggagggagtgagtaa 55  Q
    ||||||||| |||||||||||||| |||||| ||||||| ||||||    
T  27118889 atatgaaatgcccaaaacgtcatacaatttgagagggagagagtaa 27118844  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 49
Target Start/End: Original strand, 42122145 - 42122181
Alignment:
Q  13 tgaaatacccaaaacgtcatataatttgggagggagt 49  Q
    |||||| |||||||||||||| |||||||||||||||    
T  42122145 tgaaatgcccaaaacgtcatacaatttgggagggagt 42122181  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 56
Target Start/End: Complemental strand, 27807781 - 27807738
Alignment:
Q  13 tgaaatacccaaaacgtcatataatttgggagggagtgagtaat 56  Q
    ||||||||||||||||||||| ||||||||| |||| |||||||    
T  27807781 tgaaatacccaaaacgtcatacaatttgggacggagggagtaat 27807738  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 56
Target Start/End: Original strand, 28024813 - 28024856
Alignment:
Q  13 tgaaatacccaaaacgtcatataatttgggagggagtgagtaat 56  Q
    ||||||||||||||||||||| ||||||||| |||| |||||||    
T  28024813 tgaaatacccaaaacgtcatacaatttgggacggagggagtaat 28024856  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 35080500 - 35080542
Alignment:
Q  13 tgaaatacccaaaacgtcatataatttgggagggagtgagtaa 55  Q
    |||||| |||||||||||||| ||||||||| |||||||||||    
T  35080500 tgaaatgcccaaaacgtcatacaatttgggacggagtgagtaa 35080542  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 11 - 54
Target Start/End: Original strand, 50776402 - 50776445
Alignment:
Q  11 tatgaaatacccaaaacgtcatataatttgggagggagtgagta 54  Q
    ||||||||||||||||||||||| ||||||||| |||| |||||    
T  50776402 tatgaaatacccaaaacgtcatacaatttgggatggagggagta 50776445  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 41936151 - 41936193
Alignment:
Q  13 tgaaatacccaaaacgtcatataatttgggagggagtgagtaa 55  Q
    ||||||||||||||||||||| ||||||||| |||| ||||||    
T  41936151 tgaaatacccaaaacgtcatacaatttgggacggagggagtaa 41936193  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 54
Target Start/End: Complemental strand, 33839837 - 33839796
Alignment:
Q  13 tgaaatacccaaaacgtcatataatttgggagggagtgagta 54  Q
    |||||| |||||||||||||||||||||||| |||| |||||    
T  33839837 tgaaatgcccaaaacgtcatataatttgggatggagggagta 33839796  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 54
Target Start/End: Complemental strand, 7427208 - 7427167
Alignment:
Q  13 tgaaatacccaaaacgtcatataatttgggagggagtgagta 54  Q
    |||||| |||||||||||||||||||||||| |||| |||||    
T  7427208 tgaaatgcccaaaacgtcatataatttgggacggagggagta 7427167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 54
Target Start/End: Complemental strand, 31602750 - 31602709
Alignment:
Q  13 tgaaatacccaaaacgtcatataatttgggagggagtgagta 54  Q
    |||||| |||||||||||||||||||||||| |||| |||||    
T  31602750 tgaaatgcccaaaacgtcatataatttgggacggagggagta 31602709  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 11 - 56
Target Start/End: Original strand, 32588917 - 32588962
Alignment:
Q  11 tatgaaatacccaaaacgtcatataatttgggagggagtgagtaat 56  Q
    |||||||| |||||||||||||| ||||||||| |||| |||||||    
T  32588917 tatgaaatgcccaaaacgtcatacaatttgggacggagggagtaat 32588962  T

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