View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11386A_low_229 (Length: 272)
Name: NF11386A_low_229
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386A_low_229 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 46844953 - 46844684
Alignment:
| Q |
1 |
aatatctcagcattttaattcctctcaaaattttgtgcagctaccttagagaggttgagtcgagaagcagagagatcaaaatcaagcactttgatataag |
100 |
Q |
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| T |
46844953 |
aatatctcagcattttaattcctctcaaaattttgtgcagctaccttagagaggtcgagttgagaagcagagagatcaaaatcaagcactttgatataag |
46844854 |
T |
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| Q |
101 |
atttctgaggattatttcatattctaagtccattgaagcaaaggtcaaattgtttttgtttaggtggaattatgtcacatactcaatcatcgttagcttc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
46844853 |
atttctgaggattatttcatattctaagtccattgaagcaaaggtcaaattgtttttgtttaggtggaattatgtcacatactcaatcatccttagcttc |
46844754 |
T |
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| Q |
201 |
caatttaggcatcttttgtgttatataggcatcacgtcctccaacaacatcctctggtcacggcattcatgg |
272 |
Q |
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||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46844753 |
caatttaggcatc--ttgtgctatataggcatcacgtcctccaacaacatcctctggtcacggcattcatgg |
46844684 |
T |
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