View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11386A_low_230 (Length: 272)

Name: NF11386A_low_230
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11386A_low_230
NF11386A_low_230
[»] chr4 (2 HSPs)
chr4 (1-253)||(6612708-6612960)
chr4 (52-248)||(27014988-27015184)
[»] scaffold0381 (1 HSPs)
scaffold0381 (52-248)||(4599-4795)
[»] chr3 (2 HSPs)
chr3 (115-248)||(12530143-12530276)
chr3 (59-252)||(54565450-54565644)
[»] chr1 (2 HSPs)
chr1 (123-226)||(41327593-41327696)
chr1 (123-226)||(41337824-41337927)
[»] chr8 (1 HSPs)
chr8 (19-224)||(29383150-29383355)
[»] chr6 (4 HSPs)
chr6 (123-207)||(20916428-20916512)
chr6 (123-200)||(20916791-20916868)
chr6 (101-164)||(17395936-17395999)
chr6 (123-209)||(20926361-20926447)
[»] chr5 (1 HSPs)
chr5 (67-231)||(22789992-22790156)
[»] chr2 (1 HSPs)
chr2 (1-251)||(45009972-45010222)


Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 6612960 - 6612708
Alignment:
Q  1 gaatcaaaaaattcaactgtaatatgattattagaataattaacaagcgtgcaattagaagaggtacgccaaaagaaagcaaggccaccactcctagcgg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |||    
T  6612960 gaatcaaaaaattcaactgtaatatgattattagaataattaacaagcatgcaattagaagaggtacgccaaaataaagcaaggccaccactcctaccgg 6612861  T
Q  101 tgcaatcaacggaaaaacaggaatcaaaaccaagcaagtaacggaaaacgtcaattttatttcgtgatactagtgtctcacttaagaagagtacgtccgg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||    
T  6612860 tgcaatcaacggaaaaacaggaatcaaaaccaagcaagtaacgtaaaacttcaattttatttcgggatactagtgtctcacttaagaagagtacgtccgg 6612761  T
Q  201 attgaagtggcgaacgagatattttaaatcaagagttgcgctcaggctaccca 253  Q
    |||||||||  ||| |||||||||||||||| ||||||||||| |||||||||    
T  6612760 attgaagtgctgaaggagatattttaaatcaggagttgcgctcgggctaccca 6612708  T

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Target: chr4; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 52 - 248
Target Start/End: Original strand, 27014988 - 27015184
Alignment:
Q  52 caattagaagaggtacgccaaaagaaagcaaggccaccactcctagcggtgcaatcaacggaaaaacaggaatcaaaaccaagcaagtaacggaaaacgt 151  Q
    ||||||||||| || ||||  || |||||||| ||||| || |||  |||||||||||| |||||||| ||||||||||| ||||| || || ||||| |    
T  27014988 caattagaagaagtgcgccggaataaagcaagaccaccgcttctattggtgcaatcaacagaaaaacaagaatcaaaaccgagcaaatatcgaaaaactt 27015087  T
Q  152 caattttatttcgtgatactagtgtctcacttaagaagagtacgtccggattgaagtggcgaacgagatattttaaatcaagagttgcgctcaggct 248  Q
    |||||||||||||    || | |||||||||||| ||||||| ||| ||||||||||| |||||||||||||| |||||| ||  ||||||| ||||    
T  27015088 caattttatttcggcgaaccaatgtctcacttaaaaagagtatgtctggattgaagtgtcgaacgagatatttcaaatcaggaactgcgctcgggct 27015184  T

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Target: scaffold0381 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: scaffold0381
Description:

Target: scaffold0381; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 52 - 248
Target Start/End: Complemental strand, 4795 - 4599
Alignment:
Q  52 caattagaagaggtacgccaaaagaaagcaaggccaccactcctagcggtgcaatcaacggaaaaacaggaatcaaaaccaagcaagtaacggaaaacgt 151  Q
    ||||||||||| || ||||  || |||||||| ||||| || |||  |||||||||||| |||||||| ||||||||||| ||||| || || ||||| |    
T  4795 caattagaagaagtgcgccggaataaagcaagaccaccgcttctattggtgcaatcaacagaaaaacaagaatcaaaaccgagcaaatatcgaaaaactt 4696  T
Q  152 caattttatttcgtgatactagtgtctcacttaagaagagtacgtccggattgaagtggcgaacgagatattttaaatcaagagttgcgctcaggct 248  Q
    |||||||||||||    || | |||||||||||| ||||||| ||| ||||||||||| |||||||||||||| |||||| ||  ||||||| ||||    
T  4695 caattttatttcggcgaaccaatgtctcacttaaaaagagtatgtctggattgaagtgtcgaacgagatatttcaaatcaggaactgcgctcgggct 4599  T

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Target: chr3 (Bit Score: 47; Significance: 7e-18; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 115 - 248
Target Start/End: Original strand, 12530143 - 12530276
Alignment:
Q  115 aaacaggaatcaaaaccaagcaagtaacggaaaacgtcaattttatttcg-tgatactagtgtctcacttaagaagagtacgtccggattgaagtggcga 213  Q
    ||||| ||||||||||| ||||| || || ||| | |||||||||||||| ||| || | ||||| |||||| ||||||||||| ||||||||||| |||    
T  12530143 aaacaagaatcaaaaccgagcaaatatcgaaaagcttcaattttatttcggtga-accaatgtctgacttaaaaagagtacgtctggattgaagtgtcga 12530241  T
Q  214 acgagatattttaaatcaagagttgcgctcaggct 248  Q
    ||||||||||| |||||| ||  ||||||| ||||    
T  12530242 acgagatatttcaaatcaggaactgcgctcgggct 12530276  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 59 - 252
Target Start/End: Original strand, 54565450 - 54565644
Alignment:
Q  59 aagaggtacgccaaaagaaagcaaggccaccactcctagcggtgcaatcaacggaaaaacaggaatcaaaaccaagcaagtaacggaaaacgtcaatttt 158  Q
    |||||| ||||||||| || |||||||||||||| ||| | || |||||||| ||||||||  |||||||| |||||| |||||| | | | ||||||||    
T  54565450 aagaggcacgccaaaataatgcaaggccaccacttctaccagtacaatcaacagaaaaacaaaaatcaaaatcaagcacgtaacgtagagcttcaatttt 54565549  T
Q  159 atttcgtgatactagtgtctcacttaagaagagta-cgtccggattgaagtggcgaacgagatattttaaatcaagagttgcgctcaggctaccc 252  Q
    ||| ||    |||| |||||||||||| || | ||  ||||||||| ||||| ||||| |  || |||||||||||| |||||||  ||||||||    
T  54565550 attacgatggactaatgtctcacttaaaaataatagggtccggattaaagtgccgaactatgtactttaaatcaagaattgcgcttgggctaccc 54565644  T

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Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 123 - 226
Target Start/End: Complemental strand, 41327696 - 41327593
Alignment:
Q  123 atcaaaaccaagcaagtaacggaaaacgtcaattttatttcgtgatactagtgtctcacttaagaagagtacgtccggattgaagtggcgaacgagatat 222  Q
    ||||||||||||||||||||| ||| | ||||||||||||||    |||| | |||||||||||||||| | |||||||||||||||  |||| || |||    
T  41327696 atcaaaaccaagcaagtaacgtaaatcttcaattttatttcggtggactaatatctcacttaagaagaggaggtccggattgaagtgtagaactaggtat 41327597  T
Q  223 ttta 226  Q
    ||||    
T  41327596 ttta 41327593  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 123 - 226
Target Start/End: Complemental strand, 41337927 - 41337824
Alignment:
Q  123 atcaaaaccaagcaagtaacggaaaacgtcaattttatttcgtgatactagtgtctcacttaagaagagtacgtccggattgaagtggcgaacgagatat 222  Q
    ||||||||||||||||||||| ||| | ||||||||||||||    |||| | |||||||||||||||| | |||||||||||||||  |||| || |||    
T  41337927 atcaaaaccaagcaagtaacgtaaatcttcaattttatttcggtggactaatatctcacttaagaagaggaggtccggattgaagtgtagaactaggtat 41337828  T
Q  223 ttta 226  Q
    ||||    
T  41337827 ttta 41337824  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 224
Target Start/End: Complemental strand, 29383355 - 29383150
Alignment:
Q  19 gtaatatgattattagaataattaacaagcgtgcaattagaagaggtacgccaaaagaaagcaaggccaccactcctagcggtgcaatcaacggaaaaac 118  Q
    ||||| |||||||||||| ||||||||||    |||| |  ||| || ||||| || |||||||| || || |  ||| |||||| ||||||  |||| |    
T  29383355 gtaatgtgattattagaaaaattaacaagttgacaatgaagagaagtgcgccacaataaagcaagaccgcctccactaccggtgcgatcaacataaaagc 29383256  T
Q  119 aggaatcaaaaccaagcaagtaacggaaaacgtcaattttatttcgtgatactagtgtctcacttaagaagagtacgtccggattgaagtggcgaacgag 218  Q
    | ||||||||||| ||||| ||||| ||| | ||||||||||||||    ||||||||||||||||| || |||| ||||  ||||||||  ||||||||    
T  29383255 aagaatcaaaacccagcaaataacgtaaatcttcaattttatttcggtggactagtgtctcacttaaaaatagtaggtccatattgaagtatcgaacgag 29383156  T
Q  219 atattt 224  Q
     |||||    
T  29383155 gtattt 29383150  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 123 - 207
Target Start/End: Complemental strand, 20916512 - 20916428
Alignment:
Q  123 atcaaaaccaagcaagtaacggaaaacgtcaattttatttcgtgatactagtgtctcacttaagaagagtacgtccggattgaag 207  Q
    ||||||||||||||||||||| ||| | ||||||||||||||    |||| | |||||||||||||||| | |||||| ||||||    
T  20916512 atcaaaaccaagcaagtaacgtaaatcttcaattttatttcggtggactaatatctcacttaagaagaggaggtccgggttgaag 20916428  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 123 - 200
Target Start/End: Complemental strand, 20916868 - 20916791
Alignment:
Q  123 atcaaaaccaagcaagtaacggaaaacgtcaattttatttcgtgatactagtgtctcacttaagaagagtacgtccgg 200  Q
    ||||||||||||||||||||| ||| | ||||||||||||||    |||| | |||||||||||||||| | ||||||    
T  20916868 atcaaaaccaagcaagtaacgtaaatcttcaattttatttcggtggactaatatctcacttaagaagaggaggtccgg 20916791  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 101 - 164
Target Start/End: Original strand, 17395936 - 17395999
Alignment:
Q  101 tgcaatcaacggaaaaacaggaatcaaaaccaagcaagtaacggaaaacgtcaattttatttcg 164  Q
    |||||||||  |||||||| |||| ||||||||||| || ||| ||||| ||||||||||||||    
T  17395936 tgcaatcaaaagaaaaacaagaataaaaaccaagcatgttacgaaaaacttcaattttatttcg 17395999  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 209
Target Start/End: Complemental strand, 20926447 - 20926361
Alignment:
Q  123 atcaaaaccaagcaagtaacggaaaacgtcaattttatttcgtgatactagtgtctcacttaagaagagtacgtccggattgaagtg 209  Q
    ||||||||||||||| |||||  || | ||||||||||||||    |||| | |||||||||||||||| | ||| |||||||||||    
T  20926447 atcaaaaccaagcaaataacgtcaatcttcaattttatttcggtggactaatatctcacttaagaagaggaggtctggattgaagtg 20926361  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 67 - 231
Target Start/End: Original strand, 22789992 - 22790156
Alignment:
Q  67 cgccaaaagaaagcaaggccaccactcctagcggtgcaatcaacggaaaaacaggaatcaaaaccaagcaagtaacggaaaacgtcaattttatttcgtg 166  Q
    |||||||| || |||||||||||||| ||| |    |||||||| ||||| ||  ||||||||||||||| || ||| ||| | ||||||||||| ||      
T  22789992 cgccaaaataatgcaaggccaccacttctaccataacaatcaacagaaaagcatcaatcaaaaccaagcaggtgacgtaaagcttcaattttattacggt 22790091  T
Q  167 atactagtgtctcacttaagaagagtacgtccggattgaagtggcgaacgagatattttaaatca 231  Q
      |||| ||||||||||||||| | ||   ||||||||||||| ||||| || || |||||||||    
T  22790092 ggactaatgtctcacttaagaataatagaaccggattgaagtgccgaactaggtactttaaatca 22790156  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 45010222 - 45009972
Alignment:
Q  1 gaatcaaaaaattcaactgtaatatgattattagaataattaacaagcgtgcaattagaagaggtacgccaaaagaaagcaaggccaccactcctagcgg 100  Q
    ||||||| || |||||| |||||||||||||||||| ||| ||||||  ||||| ||||||    | ||||||| || ||||| || ||||  ||  | |    
T  45010222 gaatcaataatttcaacagtaatatgattattagaaaaatcaacaagattgcaactagaagtatgatgccaaaataaggcaagacccccacctcttccag 45010123  T
Q  101 tgcaatcaacggaaaaacaggaatcaaaaccaagcaagtaacggaaaacgtcaattttatttcgtgatactagtgtctcacttaagaagagtacgtccgg 200  Q
    |||  ||||| || | ||| |||||||||||||| ||||||   ||  | ||||||||||||||    ||||  ||||||||||||||||| | ||||||    
T  45010122 tgcggtcaactgagatacaagaatcaaaaccaagtaagtaaaataattcttcaattttatttcgatggactaaagtctcacttaagaagaggatgtccgg 45010023  T
Q  201 attgaagtggcgaacgagatattttaaatcaagagttgcgctcaggctacc 251  Q
    ||| ||||| ||||  || ||||| || ||  || |||||||| |||||||    
T  45010022 attaaagtgccgaattaggtatttcaagtcgggaattgcgctcgggctacc 45009972  T

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