View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11386A_low_233 (Length: 271)
Name: NF11386A_low_233
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386A_low_233 |
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Alignment Details
Target: chr6 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 341082 - 340817
Alignment:
| Q |
1 |
gttgtagaacatgattcaatattggaatcaaggatttctcaacgttgttgtgaattatcttcgcttgaaaagcttcaaagcttctttgtttgaagagata |
100 |
Q |
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| T |
341082 |
gttgtagaacatgattcaatattggaatcaatgatttctcaactttgttgtgaattatcttctcttgaaaagcttcaaagcttctttgtttgaagagata |
340983 |
T |
|
| Q |
101 |
ttggagaagattcctattgtatttccattgatctgaatctgtagtgaaaattcctaaaccaaaaggttcaaacatttcacgaaacaaatctcctttgaca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
340982 |
ttggagaagattcctattgtatttccattgatctgaatctgtagtgaaaattcctaaaccaaaaggttcaaacatttcacgaaacaaatcacctttgaca |
340883 |
T |
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| Q |
201 |
aagttgtcaaagctcttgctcatgatgtagtgaacattcaatggatcagttgtgataacaccatac |
266 |
Q |
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| T |
340882 |
aagttgtcaaagctcttgctcatgatgtagtgaacattcaatggatcagttgtgataacaccatac |
340817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 337044 - 336779
Alignment:
| Q |
1 |
gttgtagaacatgattcaatattggaatcaaggatttctcaacgttgttgtgaattatcttcgcttgaaaagcttcaaagcttctttgtttgaagagata |
100 |
Q |
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||||| ||||||||||||||| |||||||| ||||||||||| ||||||||||| || ||| ||||||||||||||||||||||||||||||||||||| |
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| T |
337044 |
gttgttgaacatgattcaataaaggaatcaatgatttctcaactttgttgtgaatgattttctcttgaaaagcttcaaagcttctttgtttgaagagata |
336945 |
T |
|
| Q |
101 |
ttggagaagattcctattgtatttccattgatctgaatctgtagtgaaaattcctaaaccaaaaggttcaaacatttcacgaaacaaatctcctttgaca |
200 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||| || ||||| || |
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| T |
336944 |
ttggagaagattcctattgtatttccattgatgtgaatctgtagtgaaaattcctaaaccaaaaggttggaacgtttcacgaaacctttcacctttctca |
336845 |
T |
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| Q |
201 |
aagttgtcaaagctcttgctcatgatgtagtgaacattcaatggatcagttgtgataacaccatac |
266 |
Q |
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|| |||||||| ||||||||||||||||||||||||||||||||||| ||||||| ||| ||||| |
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| T |
336844 |
aaattgtcaaacctcttgctcatgatgtagtgaacattcaatggatcgtttgtgattacagcatac |
336779 |
T |
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