View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11386A_low_236 (Length: 270)

Name: NF11386A_low_236
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11386A_low_236
NF11386A_low_236
[»] chr5 (7 HSPs)
chr5 (2-217)||(38447081-38447296)
chr5 (2-179)||(38180615-38180792)
chr5 (2-179)||(38190339-38190516)
chr5 (2-179)||(38207839-38208016)
chr5 (2-179)||(38217564-38217741)
chr5 (2-179)||(38455975-38456152)
chr5 (57-179)||(26033464-26033586)
[»] chr1 (2 HSPs)
chr1 (2-215)||(38342378-38342593)
chr1 (2-215)||(38446571-38446786)


Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 2 - 217
Target Start/End: Original strand, 38447081 - 38447296
Alignment:
Q  2 gaaccagaaattgggacgaggtatcaaagaacacaggacttgcacacttcggaagaagttgccgttttagatggtataataacctaagacctggtgtaaa 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38447081 gaaccagaaattgggacgaggtatcaaagaacacaggacttgcacacttcggaagaagttgccgttttagatggtataataacctaagacctggtgtaaa 38447180  T
Q  102 aaagggtccatttagtaaagaagaagaaaataaagtctttcagttacgtaagaagtatggtggattcaaatggtctaaaatcgctcgcgaggtatttttg 201  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  38447181 aaagggtccatttagtaaagaagaagaaaataaagtctttcagttacgtaagaagtttggtggattcaaatggtctaaaatcgctcgcgaggtatttttg 38447280  T
Q  202 ttcatgttttactttc 217  Q
    ||||||||||||||||    
T  38447281 ttcatgttttactttc 38447296  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 2 - 179
Target Start/End: Original strand, 38180615 - 38180792
Alignment:
Q  2 gaaccagaaattgggacgaggtatcaaagaacacaggacttgcacacttcggaagaagttgccgttttagatggtataataacctaagacctggtgtaaa 101  Q
    |||||||||||||| ||||||||||||| ||  | || |||  ||  | ||| | |||||| ||| | |||||||||||| |||||  ||| | ||| ||    
T  38180615 gaaccagaaattggaacgaggtatcaaaaaatgcggggcttatacgttgcggtaaaagttgtcgtctaagatggtataatcacctacaaccagatgtgaa 38180714  T
Q  102 aaagggtccatttagtaaagaagaagaaaataaagtctttcagttacgtaagaagtatggtggattcaaatggtctaa 179  Q
    |||||||||||||||| |||||||| ||  |||||| ||| ||||   ||  |||||||||| |||||||||||||||    
T  38180715 aaagggtccatttagtgaagaagaaaaatctaaagtttttgagttctatataaagtatggtgaattcaaatggtctaa 38180792  T

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Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 2 - 179
Target Start/End: Complemental strand, 38190516 - 38190339
Alignment:
Q  2 gaaccagaaattgggacgaggtatcaaagaacacaggacttgcacacttcggaagaagttgccgttttagatggtataataacctaagacctggtgtaaa 101  Q
    |||||||||||||| ||||||||||||| ||  | || |||  ||  | ||| | |||||| ||| | |||||||||||| |||||  ||| | ||| ||    
T  38190516 gaaccagaaattggaacgaggtatcaaaaaatgcggggcttatacgttgcggtaaaagttgtcgtctaagatggtataatcacctacaaccagatgtgaa 38190417  T
Q  102 aaagggtccatttagtaaagaagaagaaaataaagtctttcagttacgtaagaagtatggtggattcaaatggtctaa 179  Q
    |||||||||||||||| |||||||| ||  |||||| ||| ||||   ||  |||||||||| |||||||||||||||    
T  38190416 aaagggtccatttagtgaagaagaaaaatctaaagtttttgagttctatataaagtatggtgaattcaaatggtctaa 38190339  T

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Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 2 - 179
Target Start/End: Original strand, 38207839 - 38208016
Alignment:
Q  2 gaaccagaaattgggacgaggtatcaaagaacacaggacttgcacacttcggaagaagttgccgttttagatggtataataacctaagacctggtgtaaa 101  Q
    |||||||||||||| ||||||||||||| ||  | || |||  ||  | ||| | |||||| ||| | |||||||||||| |||||  ||| | ||| ||    
T  38207839 gaaccagaaattggaacgaggtatcaaaaaatgcggggcttatacgttgcggtaaaagttgtcgtctaagatggtataatcacctacaaccagatgtgaa 38207938  T
Q  102 aaagggtccatttagtaaagaagaagaaaataaagtctttcagttacgtaagaagtatggtggattcaaatggtctaa 179  Q
    |||||||||||||||| |||||||| ||  |||||| ||| ||||   ||  |||||||||| |||||||||||||||    
T  38207939 aaagggtccatttagtgaagaagaaaaatctaaagtttttgagttctatataaagtatggtgaattcaaatggtctaa 38208016  T

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Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 2 - 179
Target Start/End: Complemental strand, 38217741 - 38217564
Alignment:
Q  2 gaaccagaaattgggacgaggtatcaaagaacacaggacttgcacacttcggaagaagttgccgttttagatggtataataacctaagacctggtgtaaa 101  Q
    |||||||||||||| ||||||||||||| ||  | || |||  ||  | ||| | |||||| ||| | |||||||||||| |||||  ||| | ||| ||    
T  38217741 gaaccagaaattggaacgaggtatcaaaaaatgcggggcttatacgttgcggtaaaagttgtcgtctaagatggtataatcacctacaaccagatgtgaa 38217642  T
Q  102 aaagggtccatttagtaaagaagaagaaaataaagtctttcagttacgtaagaagtatggtggattcaaatggtctaa 179  Q
    |||||||||||||||| |||||||| ||  |||||| ||| ||||   ||  |||||||||| |||||||||||||||    
T  38217641 aaagggtccatttagtgaagaagaaaaatctaaagtttttgagttctatataaagtatggtgaattcaaatggtctaa 38217564  T

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Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 2 - 179
Target Start/End: Original strand, 38455975 - 38456152
Alignment:
Q  2 gaaccagaaattgggacgaggtatcaaagaacacaggacttgcacacttcggaagaagttgccgttttagatggtataataacctaagacctggtgtaaa 101  Q
    |||||||||||||| ||||||||||||| ||  | || |||  ||  | ||| | |||||| ||| | |||||||||||| |||||  ||| | ||| ||    
T  38455975 gaaccagaaattggaacgaggtatcaaaaaatgcggggcttatacgttgcggtaaaagttgtcgtctaagatggtataatcacctacaaccagatgtgaa 38456074  T
Q  102 aaagggtccatttagtaaagaagaagaaaataaagtctttcagttacgtaagaagtatggtggattcaaatggtctaa 179  Q
    |||||||||||||||| |||||||| ||  |||||| ||| ||||   ||  |||||||||| |||||||||||||||    
T  38456075 aaagggtccatttagtgaagaagaaaaatctaaagtttttgagttctatataaagtatggtgaattcaaatggtctaa 38456152  T

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Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 57 - 179
Target Start/End: Complemental strand, 26033586 - 26033464
Alignment:
Q  57 aagttgccgttttagatggtataataacctaagacctggtgtaaaaaagggtccatttagtaaagaagaagaaaataaagtctttcagttacgtaagaag 156  Q
    |||||| ||| | |||||||||||| ||||   ||| | ||| |||||||||||||||||| ||||||||||||  ||||| |||  |||   ||| |||    
T  26033586 aagttgtcgtctaagatggtataatcacctgcaaccagatgtgaaaaagggtccatttagtgaagaagaagaaacaaaagtttttgtgttctataaaaag 26033487  T
Q  157 tatggtggattcaaatggtctaa 179  Q
    ||||||| |||||||||||||||    
T  26033486 tatggtgaattcaaatggtctaa 26033464  T

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Target: chr1 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 2 - 215
Target Start/End: Original strand, 38342378 - 38342593
Alignment:
Q  2 gaaccagaaattgggacgaggtatcaaagaacacaggacttgcacacttcggaagaagttgccgttttagatggtataataacctaagacctggtgtaaa 101  Q
    ||||| |||||||| | ||||||||||||||||| |||||||||||||  ||||  |||||||||||||||||||||||||  ||| |||||| | |||     
T  38342378 gaaccggaaattggaaagaggtatcaaagaacacgggacttgcacactgtggaaacagttgccgttttagatggtataatactctacgacctgatttaag 38342477  T
Q  102 aaagggtccatttagtaaagaagaagaaaataaagtctttcagttacgtaagaagtatggtggattcaaatggtctaaaatcgctcgcgagg--tatttt 199  Q
    ||||||||||||||| |||||||||||| | ||| ||||| |||||  |   |||| |||||  |||||||||||||| || |||| |||||  ||||||    
T  38342478 aaagggtccatttagcaaagaagaagaagaaaaattctttgagttattttctaagtttggtgagttcaaatggtctaagatggctctcgaggtatatttt 38342577  T
Q  200 tgttcatgttttactt 215  Q
    |||||||| |||||||    
T  38342578 tgttcatgctttactt 38342593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 2 - 215
Target Start/End: Original strand, 38446571 - 38446786
Alignment:
Q  2 gaaccagaaattgggacgaggtatcaaagaacacaggacttgcacacttcggaagaagttgccgttttagatggtataataacctaagacctggtgtaaa 101  Q
    ||||| |||||||| | ||||||||||||||||| |||||||||||||  ||||  |||||||||||||||||||||||||  ||| |||||| | |||     
T  38446571 gaaccggaaattggaaagaggtatcaaagaacacgggacttgcacactgtggaaacagttgccgttttagatggtataatactctacgacctgatttaag 38446670  T
Q  102 aaagggtccatttagtaaagaagaagaaaataaagtctttcagttacgtaagaagtatggtggattcaaatggtctaaaatcgctcgcgagg--tatttt 199  Q
    ||||||||||||||| |||||||||||| | ||| ||||| |||||  |   |||| |||||  |||||||||||||| || |||| |||||  ||||||    
T  38446671 aaagggtccatttagcaaagaagaagaagaaaaattctttgagttattttctaagtttggtgagttcaaatggtctaagatggctctcgaggtatatttt 38446770  T
Q  200 tgttcatgttttactt 215  Q
    |||||||| |||||||    
T  38446771 tgttcatgctttactt 38446786  T

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