View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11386A_low_238 (Length: 270)
Name: NF11386A_low_238
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386A_low_238 |
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| [»] chr1 (1 HSPs) |
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| [»] scaffold0019 (2 HSPs) |
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| [»] scaffold0117 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 7 - 270
Target Start/End: Original strand, 45785681 - 45785944
Alignment:
| Q |
7 |
tatggtgtttattccaattaattggtggtccagataaaatccaataaccaccagggcgtaaaactcgatcgacttcatttagaaagatgccatcatattc |
106 |
Q |
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| T |
45785681 |
tatggtgtttattccaattaattggtggtccagataaaatccaataaccaccagggcgtaaaactcgatcgacttcatttagaaagatgccatcatattc |
45785780 |
T |
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| Q |
107 |
agcccatggaattaggcagcgagagcagtgggaggtatcaaaagctcttgaagggaaaggtaacctcttggaagctaggacaccaatcaatgcaggaaca |
206 |
Q |
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| T |
45785781 |
agcccatggaattaggcagcgagagcagtgggagatatcaaaagctcttgaagggaaaggtaacctcttggaagctaggacaccaatcaatgcaggaaca |
45785880 |
T |
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| Q |
207 |
ccacgttctagagcaaactgaacttgtgcttcatgtgtaccccttggtgcaagtgataatgtaa |
270 |
Q |
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| T |
45785881 |
ccacgttctagagcaaactgaacttgtgcttcatgtgtatctcttggtgcaagtgataatgtaa |
45785944 |
T |
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Target: scaffold0019 (Bit Score: 59; Significance: 5e-25; HSPs: 2)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 144 - 258
Target Start/End: Original strand, 66650 - 66764
Alignment:
| Q |
144 |
tcaaaagctcttgaagggaaaggtaacctcttggaagctaggacaccaatcaatgcaggaacaccacgttctagagcaaactgaacttgtgcttcatgtg |
243 |
Q |
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| T |
66650 |
tcaaaggctcttgaagggaaaggtaatctctttgaagcaaaaacaccaataactgcaggaacacctctttcaagagcaaattgaacttgtgcttcatgag |
66749 |
T |
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| Q |
244 |
taccccttggtgcaa |
258 |
Q |
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| T |
66750 |
tatcccttggtgcaa |
66764 |
T |
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Target: scaffold0019; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 26 - 89
Target Start/End: Original strand, 65716 - 65779
Alignment:
| Q |
26 |
aattggtggtccagataaaatccaataaccaccagggcgtaaaactcgatcgacttcatttaga |
89 |
Q |
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| T |
65716 |
aattggtggaccagatagaatccaatacccaccaggacgtagaattctatcaacttcatttaga |
65779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0117 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: scaffold0117
Description:
Target: scaffold0117; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 144 - 206
Target Start/End: Original strand, 14181 - 14243
Alignment:
| Q |
144 |
tcaaaagctcttgaagggaaaggtaacctcttggaagctaggacaccaatcaatgcaggaaca |
206 |
Q |
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| T |
14181 |
tcaaaagctcttgaatggaatggtaacctcttggaggctaagacaccaatcaatgcaggaaca |
14243 |
T |
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Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 189 - 258
Target Start/End: Original strand, 12402890 - 12402959
Alignment:
| Q |
189 |
ccaatcaatgcaggaacaccacgttctagagcaaactgaacttgtgcttcatgtgtaccccttggtgcaa |
258 |
Q |
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| T |
12402890 |
ccaatcaatgcaggaacacctcgttcaagagcaaattgaacttgagcttcatgagtatctcttggtgcaa |
12402959 |
T |
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Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 186 - 258
Target Start/End: Original strand, 28639846 - 28639918
Alignment:
| Q |
186 |
acaccaatcaatgcaggaacaccacgttctagagcaaactgaacttgtgcttcatgtgtaccccttggtgcaa |
258 |
Q |
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| T |
28639846 |
acaccaatcaaagctggaactcctcgttcaagagcaaattgaacttgagcttcatgtgtatctcttggtgcaa |
28639918 |
T |
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Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 40828967 - 40829031
Alignment:
| Q |
18 |
ttccaattaattggtggtccagataaaatccaataaccaccagggcgtaaaactcgatcgacttc |
82 |
Q |
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| T |
40828967 |
ttccaattaattggagggccagataaaatccaaaatccaccaggccttaaaactcgatcaacttc |
40829031 |
T |
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