View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11386A_low_24 (Length: 450)
Name: NF11386A_low_24
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386A_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 37 - 445
Target Start/End: Original strand, 31752316 - 31752727
Alignment:
| Q |
37 |
aataatgagaagcatatttggttaagaagaaatctttaatgaagctaaaaactgaaagagagacatgaaaaaatgacaaatcttaagttgttctccgaca |
136 |
Q |
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| T |
31752316 |
aatagtgagaagcatatttggttaagaagaaatctttaatggagctaaaaactgaaagagagacatgaaaaaatgaccaatcttaagttgttctccgaca |
31752415 |
T |
|
| Q |
137 |
cataccatttaaatctattctgaccattcaaacatataaaagggggaaggacattaatacatattctccatgattaacagttgcttaaaagcatattggt |
236 |
Q |
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| T |
31752416 |
cataccatttaaatctattctgaccattcaaacatataaaagggggaaggacattaatacatattctccatgattaagagttgcttaaaagcatattggt |
31752515 |
T |
|
| Q |
237 |
taagaaatcattactggagttaaaaattgaaagatagtaatgtaaaaaatgataatcttatgttattgttcgacacataccaatttttgtgtgtaa--ag |
334 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| || |
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| T |
31752516 |
taagaaatcattaccggagttaaaaattgaaagatagtaatgtaaaaaatgataatcttatgttattcttcgacacataccaatttttgtgagtaaatag |
31752615 |
T |
|
| Q |
335 |
aatattatctacgcgcagctacgtggattaatacctcaagttagataggatcgcaatgaacaaattatataatt-acattttaacgtgtcaatacaatta |
433 |
Q |
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||||||||||||||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |
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| T |
31752616 |
aatattatctacgcgcaactgcatggattaatacctcaagttagataggatcgcaatgaacaaattatataattaacattttaacgtgtcgatacaatta |
31752715 |
T |
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| Q |
434 |
atattcttcgac |
445 |
Q |
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|||| ||||||| |
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| T |
31752716 |
atatgcttcgac |
31752727 |
T |
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