View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11386A_low_244 (Length: 269)
Name: NF11386A_low_244
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386A_low_244 |
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| [»] chr3 (3 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 169; Significance: 1e-90; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 20 - 269
Target Start/End: Complemental strand, 22720461 - 22720208
Alignment:
| Q |
20 |
aaaggttcctctattacaggtctctttgtt----attttggaatttctgtttgaaatatgactaaacttgcccctcttgaagaaacccttttgaatggtg |
115 |
Q |
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||||||| ||||||||||||||||||| || || ||||| ||||||||| |||||||| ||||||||| |||||||||| ||||||||||||||| |
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| T |
22720461 |
aaaggtttctctattacaggtctctttctttgtcatgttggattttctgtttacaatatgaccaaacttgcctctcttgaagagtcccttttgaatggtg |
22720362 |
T |
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| Q |
116 |
aagttagtgtaagcaacaataattctgattccaaaaagacactaagaaatgaaatttcaaccagttattcaaatgctggatttttcagcattcttacatt |
215 |
Q |
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||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
22720361 |
aagatagtgtaagcaacaacaattctgattccaaaaagacactaagaaatgaaagttcaaccagttattcaaatgctggattttttagcattcttacatt |
22720262 |
T |
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| Q |
216 |
ctcatggatgactccattaatagctttaggcaataaaaagattttagaccatga |
269 |
Q |
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|||||||||||||||| |||||||||||||||||||||||| |||| ||||||| |
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| T |
22720261 |
ctcatggatgactccactaatagctttaggcaataaaaagactttaaaccatga |
22720208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 70 - 269
Target Start/End: Original strand, 22738248 - 22738447
Alignment:
| Q |
70 |
aatatgactaaacttgcccctcttgaagaaacccttttgaatggtgaagttagtgtaagcaacaataattctgattccaaaaagacactaagaaatgaaa |
169 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
22738248 |
aatatgactaaacttgcccctcttgaagaatcccttttgaatggtgaagctagtgtaagcaacaacaattctgattccaaaaagacactaagaaatgaaa |
22738347 |
T |
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| Q |
170 |
tttcaaccagttattcaaatgctggatttttcagcattcttacattctcatggatgactccattaatagctttaggcaataaaaagattttagaccatga |
269 |
Q |
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| T |
22738348 |
gttcaaccagttattcaaatgctggatttttaagcattcttacattctcatggatgactccactaatagctttaggcaataaaaagactttaaaccatga |
22738447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 20 - 269
Target Start/End: Complemental strand, 22728795 - 22728542
Alignment:
| Q |
20 |
aaaggttcctctattacaggtctcttt----gttattttggaatttctgtttgaaatatgactaaacttgcccctcttgaagaaacccttttgaatggtg |
115 |
Q |
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||||||||||||||||||||||||||| ||||| ||||| ||||||||| |||||||| ||||||||| |||||||||| ||||||||||||||| |
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| T |
22728795 |
aaaggttcctctattacaggtctctttctttgttatgttggattttctgtttacaatatgaccaaacttgcctctcttgaagagtcccttttgaatggtg |
22728696 |
T |
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| Q |
116 |
aagttagtgtaagcaacaataattctgattccaaaaagacactaagaaatgaaatttcaaccagttattcaaatgctggatttttcagcattcttacatt |
215 |
Q |
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||| || |||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |
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| T |
22728695 |
aaggtactgtaagcaacaacaattttgattccaaaaagacactaagaaatgaaatttcaaccagttatttgaatgctggatttttcagcattgttacatt |
22728596 |
T |
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| Q |
216 |
ctcatggatgactccattaatagctttaggcaataaaaagattttagaccatga |
269 |
Q |
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|||||||||||||||| ||||| ||||||| | |||||||| |||||||||||| |
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| T |
22728595 |
ctcatggatgactccactaataactttaggaagtaaaaagactttagaccatga |
22728542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 20 - 269
Target Start/End: Original strand, 5590757 - 5591010
Alignment:
| Q |
20 |
aaaggttcctctattacaggtctcttt----gttattttggaatttctgtttgaaatatgactaaacttgcccctcttgaagaaacccttttgaatggtg |
115 |
Q |
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||||||||||||||||||||||||||| ||||| ||||| ||||||||| |||||||| ||||||||| |||||||||| ||||||||||||||| |
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| T |
5590757 |
aaaggttcctctattacaggtctctttctttgttatgttggattttctgtttacaatatgaccaaacttgcctctcttgaagagtcccttttgaatggtg |
5590856 |
T |
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| Q |
116 |
aagttagtgtaagcaacaataattctgattccaaaaagacactaagaaatgaaatttcaaccagttattcaaatgctggatttttcagcattcttacatt |
215 |
Q |
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||| || |||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |
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| T |
5590857 |
aaggtactgtaagcaacaacaattttgattccaaaaagacactaagaaatgaaatttcaaccagttatttgaatgctggatttttcagcattgttacatt |
5590956 |
T |
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| Q |
216 |
ctcatggatgactccattaatagctttaggcaataaaaagattttagaccatga |
269 |
Q |
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|||||||||||||||| ||||| ||||||| | |||||||| |||||||||||| |
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| T |
5590957 |
ctcatggatgactccactaataactttaggaagtaaaaagactttagaccatga |
5591010 |
T |
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