View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11386A_low_247 (Length: 267)
Name: NF11386A_low_247
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386A_low_247 |
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Alignment Details
Target: chr7 (Bit Score: 241; Significance: 1e-133; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 261
Target Start/End: Complemental strand, 3686218 - 3685958
Alignment:
| Q |
1 |
aaaaccaatcagcaactagcaagtaaccactttcttttttctttcctccctaacataactgtcatattttatttctagtactgctatttatcaagaacac |
100 |
Q |
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||||||| || ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
3686218 |
aaaaccactcggcaactagcaagtaaccactttcttttttcttttctccctaacataactgtcatattttttttctagtactgctatttatcaagaacac |
3686119 |
T |
|
| Q |
101 |
acctcataacgatcttcccgaatcgatacgtgtggtaattataaaggaagaagttgtgtatagttcatgaatgagcggaaatcacagtgtgtatgtgtta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3686118 |
acctcataacgatcttcccgaatcgatacgtgtggtaattataaaggaagaagttgtgtatagttcatgaatgagcggaaatcacagtgtgtatgtgtta |
3686019 |
T |
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| Q |
201 |
taagaaccaatcacttactgccacatcagttcgcgatgcgttcgtgatctatattcttcga |
261 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3686018 |
aaagaaccaatcacttactgccacatcagttcgcgatgcgttcgtgatctatattcttcga |
3685958 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 61 - 260
Target Start/End: Complemental strand, 3693925 - 3693725
Alignment:
| Q |
61 |
gtcatattttatttctagtactgctatttatcaagaacacacctcataacgatcttcccgaatcgatacgtgtggtaattataaaggaagaagttgtgta |
160 |
Q |
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||||||||||||||||||||||| | |||||||| |||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||| ||||| |
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| T |
3693925 |
gtcatattttatttctagtactgttgtttatcaaaaacacacctcatcatgatcttcccgaatcgatacgtgttgtaattataaaggaagaagcagtgta |
3693826 |
T |
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| Q |
161 |
tagttcatgaatgagcggaaatcacagtgtgtatgtgttataag-aaccaatcacttactgccacatcagttcgcgatgcgttcgtgatctatattcttc |
259 |
Q |
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| T |
3693825 |
tggttcaggaatgagcggaaatcacagtgtgtatgtgttataagaaaccaatcacttactgccaaatcagttcgtgatgcgttattgatcaatattcttc |
3693726 |
T |
|
| Q |
260 |
g |
260 |
Q |
| |
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| T |
3693725 |
g |
3693725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 54 - 242
Target Start/End: Complemental strand, 3679409 - 3679213
Alignment:
| Q |
54 |
cataactgtcatatttt-atttctagtactgctatttatcaagaacacacctcataacgatcttcccgaatcgatac---gt----gtggtaattataaa |
145 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| || || |||||||| || |
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| T |
3679409 |
cataactgtcatattttcatttctagtactgctatttatcaagaacatgcctcatcacgatcttcccgaatcgatacaccgtacacgttgtaattattaa |
3679310 |
T |
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| Q |
146 |
ggaagaagttgtgtatagttcatgaatgagcggaaatcacagtgtgtatgtgttataag-aaccaatcacttactgccacatcagttcgcgatgcgtt |
242 |
Q |
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| ||||||| |||||||||||| ||||||||||||||||||| |||||||||||||||| |||||||||||| |||||| |||| |||| |||||||| |
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| T |
3679309 |
g-aagaagtagtgtatagttcaggaatgagcggaaatcacagcgtgtatgtgttataagaaaccaatcacttgctgccaaatcaattcgtgatgcgtt |
3679213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 66 - 260
Target Start/End: Complemental strand, 3675716 - 3675532
Alignment:
| Q |
66 |
attttatttctagtactgctatttatcaagaacacacctcataacgatcttcccgaatcgatacgtgtggtaattataaaggaagaagttgtgtatagtt |
165 |
Q |
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||||||||||||||||| |||||||||||||||||| |||| | ||||||||||||||||| ||||| ||||||||||||||||||| |||||||||| |
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| T |
3675716 |
attttatttctagtactactatttatcaagaacacatctcaccatgatcttcccgaatcgattcgtgttgtaattataaaggaagaagcagtgtatagtt |
3675617 |
T |
|
| Q |
166 |
catgaatgagcggaaatcacagtgtgtatgtgttataagaaccaatcacttactgccacatcagttcgcgatgcgttcgtgatctatattcttcg |
260 |
Q |
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| |||||||||||||| |||| ||| |||||||| ||||| ||||||||||| | |||||||||||||||||||||||||| |
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| T |
3675616 |
ctggaatgagcggaaatgacagcacgtaagtgttata----------acttataaccacatcagtttgtgatgcgttcgtgatctatattcttcg |
3675532 |
T |
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