View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11386A_low_248 (Length: 267)
Name: NF11386A_low_248
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386A_low_248 |
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Alignment Details
Target: chr5 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 11365128 - 11364875
Alignment:
| Q |
1 |
aatattaacctaaagttgcaaaggggaaatgaaatgacaatgctaagatgtaaaatatgtttatgtgatgcaaagatatttagcagtttaaaaagaatga |
100 |
Q |
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| T |
11365128 |
aatattaacctaaagttgcaaaggggaaatgaaatgacaatgctaagatgtaaaatatgtttatgtgatgcaaagatatgcagcagtttaaaaagaatga |
11365029 |
T |
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| Q |
101 |
ccaatgtactgttgtttcaggtaacaaaaactcaccaaaattaaatgttaatagagtacaagatataccttgtcaagcaaatcattttctacatcattct |
200 |
Q |
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| T |
11365028 |
ccaatctactgttgtttcaggtaacaaaaactcaccaaaattaaatgttaatagagtacaagatataccttgtcaagcaaatcattttctacatcattct |
11364929 |
T |
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| Q |
201 |
taacaagatgtgacaagcatctgattaatccaggcagagaaacctttagattcg |
254 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11364928 |
taacaagatgtgacaagcatctgattaatccaggcagagaaacctttagattcg |
11364875 |
T |
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