View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11386A_low_249 (Length: 267)

Name: NF11386A_low_249
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11386A_low_249
NF11386A_low_249
[»] chr1 (1 HSPs)
chr1 (7-262)||(36314413-36314671)
[»] chr8 (21 HSPs)
chr8 (90-214)||(19345334-19345458)
chr8 (90-214)||(19503885-19504009)
chr8 (102-214)||(19337681-19337793)
chr8 (115-214)||(19355714-19355813)
chr8 (91-214)||(19468410-19468533)
chr8 (91-214)||(19555331-19555454)
chr8 (103-217)||(19410958-19411072)
chr8 (103-217)||(19457977-19458091)
chr8 (103-217)||(19522987-19523101)
chr8 (91-196)||(19404923-19405028)
chr8 (97-194)||(19376801-19376898)
chr8 (103-214)||(19592308-19592416)
chr8 (103-217)||(19469355-19469466)
chr8 (103-217)||(19540279-19540390)
chr8 (12-188)||(19390685-19390864)
chr8 (106-188)||(19172660-19172742)
chr8 (103-201)||(19287901-19287999)
chr8 (125-172)||(19371145-19371192)
chr8 (12-63)||(19410882-19410933)
chr8 (12-63)||(19457901-19457952)
chr8 (12-63)||(19523126-19523177)
[»] chr6 (1 HSPs)
chr6 (91-187)||(19543241-19543337)


Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 7 - 262
Target Start/End: Complemental strand, 36314671 - 36314413
Alignment:
Q  7 tttggagttaaagatgggaagtttatacgatgggagctatcctcgaagggcaagttaacaagtggtgatgaagacaatgctagtggagaaattggaaatg 106  Q
    |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  36314671 tttgaagttaaagatgggaagtttatatgatgggagctatcctcgaagggcaagttaacaagtggtgttgaagacaatgctagtggagaaattggaaatg 36314572  T
Q  107 cagatatatgttatggatataatagcaatggagggtgccaaaaatgggaggatataccaacttgtagggaacctggtgaggtttttcagaaaaaggtggg 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36314571 cagatatatgttatggatataatagcaatggagggtgccaaaaatgggaggatataccaacttgtagggaacctggtgaggtttttcagaaaaaggtggg 36314472  T
Q  207 aacacc---aagcaaaatggacaatgcatcatcatatgaatggaatgtaatttatggtt 262  Q
    ||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36314471 aacaccaaaaagcaaaatggacaatgcatcatcatatgaatggaatgtaatttatggtt 36314413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 93; Significance: 2e-45; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 90 - 214
Target Start/End: Original strand, 19345334 - 19345458
Alignment:
Q  90 tggagaaattggaaatgcagatatatgttatggatataatagcaatggagggtgccaaaaatgggaggatataccaacttgtagggaacctggtgaggtt 189  Q
    |||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||  ||||||||||    
T  19345334 tggagatattgggaatgcagatatgtgttatggatataatagcaatggagggtgccaaaaatgggaggaaataccaaattgtagggaaaatggtgaggtt 19345433  T
Q  190 tttcagaaaaaggtgggaacaccaa 214  Q
    |||||||||| ||||||||||||||    
T  19345434 tttcagaaaatggtgggaacaccaa 19345458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 90 - 214
Target Start/End: Complemental strand, 19504009 - 19503885
Alignment:
Q  90 tggagaaattggaaatgcagatatatgttatggatataatagcaatggagggtgccaaaaatgggaggatataccaacttgtagggaacctggtgaggtt 189  Q
    |||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||  ||||||||||    
T  19504009 tggagagattgggaatgcagatatgtgttatggatataatagcaatggagggtgccaaaaatgggaggaaataccaaattgtagggaaaatggtgaggtt 19503910  T
Q  190 tttcagaaaaaggtgggaacaccaa 214  Q
    ||||||||||  | |||||||||||    
T  19503909 tttcagaaaattgcgggaacaccaa 19503885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 102 - 214
Target Start/End: Original strand, 19337681 - 19337793
Alignment:
Q  102 aaatgcagatatatgttatggatataatagcaatggagggtgccaaaaatgggaggatataccaacttgtagggaacctggtgaggtttttcagaaaaag 201  Q
    ||||||||| || |||||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||||| |    
T  19337681 aaatgcagacatgtgttatggatataatagcgatggagggtgccaaaaatgggaggaaataccaaattgtagggaacctggtgaggtttttcggaaaatg 19337780  T
Q  202 gtgggaacaccaa 214  Q
    ||||||| |||||    
T  19337781 gtgggaagaccaa 19337793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 115 - 214
Target Start/End: Original strand, 19355714 - 19355813
Alignment:
Q  115 tgttatggatataatagcaatggagggtgccaaaaatgggaggatataccaacttgtagggaacctggtgaggtttttcagaaaaaggtgggaacaccaa 214  Q
    |||||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||| |||||    
T  19355714 tgttatggatataatagcgatggagggtgccaaaaatgggaggaaataccaaattgtagggaacctggtgaggtttttcggaaaaaggtgggaagaccaa 19355813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 91 - 214
Target Start/End: Complemental strand, 19468533 - 19468410
Alignment:
Q  91 ggagaaattggaaatgcagatatatgttatggatataatagcaatggagggtgccaaaaatgggaggatataccaacttgtagggaacctggtgaggttt 190  Q
    ||||| |||| |||||||||||| |||||||||||||||||  ||||||| |||||||||||||||||||||||||||||||||| |||||||||||  |    
T  19468533 ggagatattgtaaatgcagatatgtgttatggatataatagtgatggaggatgccaaaaatgggaggatataccaacttgtagggcacctggtgaggggt 19468434  T
Q  191 ttcagaaaaaggtgggaacaccaa 214  Q
    |||||||||||| ||||| |||||    
T  19468433 ttcagaaaaaggcgggaagaccaa 19468410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 91 - 214
Target Start/End: Complemental strand, 19555454 - 19555331
Alignment:
Q  91 ggagaaattggaaatgcagatatatgttatggatataatagcaatggagggtgccaaaaatgggaggatataccaacttgtagggaacctggtgaggttt 190  Q
    ||||| |||| |||||||||||| |||||||||||||||||  ||||||| |||||||||||||||||||||||||||||||||| |||||||||||  |    
T  19555454 ggagatattgtaaatgcagatatgtgttatggatataatagtgatggaggatgccaaaaatgggaggatataccaacttgtagggcacctggtgaggggt 19555355  T
Q  191 ttcagaaaaaggtgggaacaccaa 214  Q
    |||||||||||| ||||| |||||    
T  19555354 ttcagaaaaaggcgggaagaccaa 19555331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 103 - 217
Target Start/End: Original strand, 19410958 - 19411072
Alignment:
Q  103 aatgcagatatatgttatggatataatagcaatggagggtgccaaaaatgggaggatataccaacttgtagggaacctggtgaggtttttcagaaaaagg 202  Q
    ||||||||||| ||||| |||||||||||  ||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||    
T  19410958 aatgcagatatgtgttacggatataatagtgatggagggtgccaaaaatgggaggatataccaacttgcagggaacctggtgagatgtttcagaaaaagg 19411057  T
Q  203 tgggaacaccaagca 217  Q
     ||||| ||||||||    
T  19411058 cgggaagaccaagca 19411072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 103 - 217
Target Start/End: Original strand, 19457977 - 19458091
Alignment:
Q  103 aatgcagatatatgttatggatataatagcaatggagggtgccaaaaatgggaggatataccaacttgtagggaacctggtgaggtttttcagaaaaagg 202  Q
    ||||||||||| ||||| |||||||||||  ||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||    
T  19457977 aatgcagatatgtgttacggatataatagtgatggagggtgccaaaaatgggaggatataccaacttgcagggaacctggtgagatgtttcagaaaaagg 19458076  T
Q  203 tgggaacaccaagca 217  Q
     ||||| ||||||||    
T  19458077 cgggaagaccaagca 19458091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 103 - 217
Target Start/End: Complemental strand, 19523101 - 19522987
Alignment:
Q  103 aatgcagatatatgttatggatataatagcaatggagggtgccaaaaatgggaggatataccaacttgtagggaacctggtgaggtttttcagaaaaagg 202  Q
    ||||||||||| ||||| |||||||||||  ||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||||||||    
T  19523101 aatgcagatatgtgttacggatataatagtgatggagggtgccaaaaatgggaggatataccaacttgcagggaacctggtgagatgtttcagaaaaagg 19523002  T
Q  203 tgggaacaccaagca 217  Q
     ||||| ||||||||    
T  19523001 cgggaagaccaagca 19522987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 91 - 196
Target Start/End: Original strand, 19404923 - 19405028
Alignment:
Q  91 ggagaaattggaaatgcagatatatgttatggatataatagcaatggagggtgccaaaaatgggaggatataccaacttgtagggaacctggtgaggttt 190  Q
    ||||| ||||||||||||||||| |||||||||||||||||  | |||||||||||||| |||||||||||||||||||||||||||||||||||||| |    
T  19404923 ggagatattggaaatgcagatatgtgttatggatataatagggacggagggtgccaaaagtgggaggatataccaacttgtagggaacctggtgaggtgt 19405022  T
Q  191 ttcaga 196  Q
    ||||||    
T  19405023 ttcaga 19405028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 97 - 194
Target Start/End: Original strand, 19376801 - 19376898
Alignment:
Q  97 attggaaatgcagatatatgttatggatataatagcaatggagggtgccaaaaatgggaggatataccaacttgtagggaacctggtgaggtttttca 194  Q
    |||||||||||||||||||||||||||||||||||  || ||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||    
T  19376801 attggaaatgcagatatatgttatggatataatagtgatcgagggtgccaaaaatgggaggatataccagcttgcagggaacctggtgaggtgtttca 19376898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 103 - 214
Target Start/End: Original strand, 19592308 - 19592416
Alignment:
Q  103 aatgcagatatatgttatggatataatagcaatggagggtgccaaaaatgggaggatataccaacttgtagggaacctggtgaggtttttcagaaaaagg 202  Q
    ||||||||||| ||||| ||||||| |    ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  19592308 aatgcagatatgtgttacggatatagtg---atggaggatgccaaaaatgggaggatataccaacttgcagggaacctggtgaggtttttcagaaaaagg 19592404  T
Q  203 tgggaacaccaa 214  Q
     |||||||||||    
T  19592405 cgggaacaccaa 19592416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 103 - 217
Target Start/End: Complemental strand, 19469466 - 19469355
Alignment:
Q  103 aatgcagatatatgttatggatataatagcaatggagggtgccaaaaatgggaggatataccaacttgtagggaacctggtgaggtttttcagaaaaagg 202  Q
    ||||||||||| ||||| ||||||| |    ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||    
T  19469466 aatgcagatatgtgttacggatatagtg---atggaggatgccaaaaatgggaggatataccaacttgcagggaacctggtgaggtgtttcagaaaaagg 19469370  T
Q  203 tgggaacaccaagca 217  Q
     ||||| ||||||||    
T  19469369 cgggaagaccaagca 19469355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 103 - 217
Target Start/End: Complemental strand, 19540390 - 19540279
Alignment:
Q  103 aatgcagatatatgttatggatataatagcaatggagggtgccaaaaatgggaggatataccaacttgtagggaacctggtgaggtttttcagaaaaagg 202  Q
    ||||||||||| ||||| ||||||| |    ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||    
T  19540390 aatgcagatatgtgttacggatatagtg---atggaggatgccaaaaatgggaggatataccaacttgcagggaacctggtgaggtgtttcagaaaaagg 19540294  T
Q  203 tgggaacaccaagca 217  Q
     ||||| ||||||||    
T  19540293 cgggaagaccaagca 19540279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 12 - 188
Target Start/End: Original strand, 19390685 - 19390864
Alignment:
Q  12 agttaaagatgggaagtttatacgatgggagctatcctcgaagggcaagttaacaagtggtgatga---agacaatgctagtggagaaattggaaatgca 108  Q
    ||||||||||||||||||||||||||||    |  |||||||||| | ||||| ||||| ||||||   ||| | |  ||||| ||| ||||  ||||||    
T  19390685 agttaaagatgggaagtttatacgatggttcattacctcgaaggggaggttaataagtgctgatgagggagagatttatagtgcagacattgctaatgca 19390784  T
Q  109 gatatatgttatggatataatagcaatggagggtgccaaaaatgggaggatataccaacttgtagggaacctggtgaggt 188  Q
    ||||  |||||||||||||||||  |||  |||||||||||||||||||||||||||||||| ||||| ||| |||||||    
T  19390785 gataagtgttatggatataatagtgatgccgggtgccaaaaatgggaggatataccaacttgcagggaccctcgtgaggt 19390864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 106 - 188
Target Start/End: Complemental strand, 19172742 - 19172660
Alignment:
Q  106 gcagatatatgttatggatataatagcaatggagggtgccaaaaatgggaggatataccaacttgtagggaacctggtgaggt 188  Q
    |||||||| |||||||| ||||||| | |||||||||||||||||||||||||||||||||| || |||||||| ||||||||    
T  19172742 gcagatatgtgttatggctataataccgatggagggtgccaaaaatgggaggatataccaacctgcagggaacccggtgaggt 19172660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 103 - 201
Target Start/End: Original strand, 19287901 - 19287999
Alignment:
Q  103 aatgcagatatatgttatggatataatagcaatggagggtgccaaaaatgggaggatataccaacttgtagggaacctggtgaggtttttcagaaaaag 201  Q
    ||||||||||  ||||||||||||||||   ||| |||||||||||||||||||||||| |||||||| ||||||| ||||||||| ||||| ||||||    
T  19287901 aatgcagataagtgttatggatataataatgatgaagggtgccaaaaatgggaggatatgccaacttgcagggaacgtggtgaggtctttcaaaaaaag 19287999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 125 - 172
Target Start/End: Original strand, 19371145 - 19371192
Alignment:
Q  125 ataatagcaatggagggtgccaaaaatgggaggatataccaacttgta 172  Q
    ||||||| ||||| || ||||||||||||||| |||||||||||||||    
T  19371145 ataatagtaatggtggatgccaaaaatgggagtatataccaacttgta 19371192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 63
Target Start/End: Original strand, 19410882 - 19410933
Alignment:
Q  12 agttaaagatgggaagtttatacgatgggagctatcctcgaagggcaagtta 63  Q
    |||||||||||||||||||  || |||||| |||||||||||||| ||||||    
T  19410882 agttaaagatgggaagtttgcacaatgggaactatcctcgaaggggaagtta 19410933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 63
Target Start/End: Original strand, 19457901 - 19457952
Alignment:
Q  12 agttaaagatgggaagtttatacgatgggagctatcctcgaagggcaagtta 63  Q
    |||||||||||||||||||  || |||||| |||||||||||||| ||||||    
T  19457901 agttaaagatgggaagtttgcacaatgggaactatcctcgaaggggaagtta 19457952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 63
Target Start/End: Complemental strand, 19523177 - 19523126
Alignment:
Q  12 agttaaagatgggaagtttatacgatgggagctatcctcgaagggcaagtta 63  Q
    |||||||||||||||||||  || |||||| |||||||||||||| ||||||    
T  19523177 agttaaagatgggaagtttgcacaatgggaactatcctcgaaggggaagtta 19523126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 91 - 187
Target Start/End: Original strand, 19543241 - 19543337
Alignment:
Q  91 ggagaaattggaaatgcagatatatgttatggatataatagcaatggagggtgccaaaaatgggaggatataccaacttgtagggaacctggtgagg 187  Q
    ||||| ||||||||||||||  | |||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  19543241 ggagatattggaaatgcagacttgtgttatggatataatatcaacggagggtgccaaaaatgggaggatataccaagttgtagggaacctggtgagg 19543337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University