View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11386A_low_261 (Length: 263)

Name: NF11386A_low_261
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11386A_low_261
NF11386A_low_261
[»] chr6 (4 HSPs)
chr6 (14-257)||(32931340-32931583)
chr6 (31-156)||(32919664-32919790)
chr6 (173-219)||(4323878-4323923)
chr6 (171-217)||(32920995-32921041)
[»] chr7 (2 HSPs)
chr7 (170-217)||(47450466-47450513)
chr7 (164-213)||(34395025-34395074)
[»] chr8 (2 HSPs)
chr8 (164-219)||(10440378-10440433)
chr8 (175-219)||(8217032-8217076)
[»] chr3 (1 HSPs)
chr3 (160-217)||(33331939-33331996)
[»] chr4 (1 HSPs)
chr4 (164-216)||(22402391-22402443)


Alignment Details
Target: chr6 (Bit Score: 228; Significance: 1e-126; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 14 - 257
Target Start/End: Original strand, 32931340 - 32931583
Alignment:
Q  14 agacatgaggttgccaaatgagattgctttgtttctgacaaaatcgtagaattttatcaaacactgtcttagctgcatagacgtctgaaagtatgtagcg 113  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  32931340 agacatgaggttgccaaatgagattgctttgtttctaacaaaatcgtagaattttatcaaacactgtcttagctgcatagacgtctgaaagtatgtagca 32931439  T
Q  114 ctgacacctcgtattgatggcgtgtccagtgttatacatgtgtcaatgtccgacaccgacacatgtagttatattaaatcccttctattttcttaaatta 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||    
T  32931440 ctgacacctcgtattgatggcgtgtccagtgttatacatgtgtcaatgtccgacaccgacacatgtagttatatttaatcacttctattttcttaaatta 32931539  T
Q  214 ttatcgcttttcacgtgtcattgtcagtgtttcatggtctaaag 257  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  32931540 ttatcgcttttcacgtgtcattgtcagtgtttcatggtctaaag 32931583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 31 - 156
Target Start/End: Original strand, 32919664 - 32919790
Alignment:
Q  31 atgagattgctttgtttctgacaaaatcgtagaattttatcaaacactgtcttagctgcatagacgtctgaaag-tatgtagcgctgacacctcgtattg 129  Q
    |||| ||||||||||| || || | ||| || ||||| |||||||| ||||||||||||||||| ||||||||| |||||||| |  |||||||| ||||    
T  32919664 atgatattgctttgttcctaacgatatcatacaatttcatcaaacattgtcttagctgcatagaagtctgaaagttatgtagcaccaacacctcggattg 32919763  T
Q  130 atggcgtgtccagtgttatacatgtgt 156  Q
    | || |||||| |||||  ||||||||    
T  32919764 agggagtgtccggtgtttgacatgtgt 32919790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 173 - 219
Target Start/End: Original strand, 4323878 - 4323923
Alignment:
Q  173 cacatgtagttatattaaatcccttctattttcttaaattattatcg 219  Q
    |||||||||| ||||| || |||||||||||||||||||||||||||    
T  4323878 cacatgtagt-atattcaaccccttctattttcttaaattattatcg 4323923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 217
Target Start/End: Original strand, 32920995 - 32921041
Alignment:
Q  171 gacacatgtagttatattaaatcccttctattttcttaaattattat 217  Q
    ||||||||||| || |||||||| |||| ||||||||||||||||||    
T  32920995 gacacatgtagctacattaaatcacttcaattttcttaaattattat 32921041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 170 - 217
Target Start/End: Original strand, 47450466 - 47450513
Alignment:
Q  170 cgacacatgtagttatattaaatcccttctattttcttaaattattat 217  Q
    |||||||| |||||||| ||||||| ||||||||||||||||||||||    
T  47450466 cgacacatatagttatactaaatccattctattttcttaaattattat 47450513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 164 - 213
Target Start/End: Complemental strand, 34395074 - 34395025
Alignment:
Q  164 cgacaccgacacatgtagttatattaaatcccttctattttcttaaatta 213  Q
    |||||||||||| ||| |||| ||| |||| |||||||||||||||||||    
T  34395074 cgacaccgacacgtgtggttagattcaatcacttctattttcttaaatta 34395025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 164 - 219
Target Start/End: Complemental strand, 10440433 - 10440378
Alignment:
Q  164 cgacaccgacacatgtagttatattaaatcccttctattttcttaaattattatcg 219  Q
    ||||| ||||||||||||| | ||| |||| ||| |||||||||||||||||||||    
T  10440433 cgacaacgacacatgtagtaacattcaatcacttttattttcttaaattattatcg 10440378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 219
Target Start/End: Original strand, 8217032 - 8217076
Alignment:
Q  175 catgtagttatattaaatcccttctattttcttaaattattatcg 219  Q
    |||||||||| ||| ||| ||||||||||||| ||||||||||||    
T  8217032 catgtagttacattcaattccttctattttctaaaattattatcg 8217076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 160 - 217
Target Start/End: Original strand, 33331939 - 33331996
Alignment:
Q  160 tgtccgacaccgacacatgtagttatattaaatcccttctattttcttaaattattat 217  Q
    |||| |||||||||||||||| ||| ||| |||| ||| |||||||| ||||||||||    
T  33331939 tgtctgacaccgacacatgtaattacatttaatcacttttattttctcaaattattat 33331996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 216
Target Start/End: Complemental strand, 22402443 - 22402391
Alignment:
Q  164 cgacaccgacacatgtagttatattaaatcccttctattttcttaaattatta 216  Q
    |||||||||||||||| |||| ||| |||| |||||||||||| || ||||||    
T  22402443 cgacaccgacacatgtggttacattcaatcacttctattttctcaatttatta 22402391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University