View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11386A_low_265 (Length: 262)
Name: NF11386A_low_265
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386A_low_265 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 11 - 245
Target Start/End: Original strand, 55341427 - 55341661
Alignment:
| Q |
11 |
cagagacaatacatatcaccagcattaaagcagaggccatactacttttcacctcatgagcatattcagcacaagctaaaccaaggaatgttaaagggaa |
110 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55341427 |
cagacacaatacatatcaccagcattaaagcagaggccatactacttttcacctcatgagcatattcagcacaagctaaaccaaggaatgttaaagggaa |
55341526 |
T |
|
| Q |
111 |
tgagtaaatccaccatgtaacgtttaaccttctcatagttttcttgaacagtgctggtctgcaagcctgcattatacaagccttgatcattaaaatgaaa |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55341527 |
tgagtaaatccaccatgtaacgtttaaccttttcatagttttcttgaacagtgctggtctgcaagcctgcattatacaagccttgatcattaaaatgaaa |
55341626 |
T |
|
| Q |
211 |
gggatgattaaaataaccaattaaatatatatata |
245 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
55341627 |
tggatgattaaaataaccaattaaatatatatata |
55341661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University