View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11386A_low_269 (Length: 260)

Name: NF11386A_low_269
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11386A_low_269
NF11386A_low_269
[»] chr2 (2 HSPs)
chr2 (1-247)||(14306071-14306321)
chr2 (98-160)||(2854436-2854498)
[»] chr4 (2 HSPs)
chr4 (98-162)||(41735403-41735467)
chr4 (98-165)||(41621886-41621953)
[»] chr7 (1 HSPs)
chr7 (98-160)||(25120018-25120080)
[»] chr6 (1 HSPs)
chr6 (98-160)||(40026-40088)
[»] chr3 (2 HSPs)
chr3 (98-140)||(44455088-44455130)
chr3 (98-162)||(45249436-45249500)
[»] chr5 (1 HSPs)
chr5 (96-148)||(1056554-1056606)
[»] chr1 (1 HSPs)
chr1 (98-162)||(42410272-42410336)


Alignment Details
Target: chr2 (Bit Score: 175; Significance: 3e-94; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 14306071 - 14306321
Alignment:
Q  1 aatgtattggtgaatcattttctt---tgaaatgcaggagtcagtattttaggacaatannnnnnnnnacaaaagactcacttat--taaaggacggagg 95  Q
    ||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||         |||||||||||||||||  ||| |||||||||    
T  14306071 aatgtattggtgaatcattttcttaagtgaaatgcaggagtcagtattttaggacaatatttttttt-acaaaagactcacttatattaagggacggagg 14306169  T
Q  96 gagtattttcaagacaaaatttctttacgtgaatttcttaaacaatcctcttagagcacttgttaaccaaactcataaaagaatacattaaagaagtaag 195  Q
    |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  14306170 gagtattttcaagacaaaatttcttttcgtggatttcttaaacaatcctcttagagcacttgttaaccaaactcataaaagaataaattaaagaagtaag 14306269  T
Q  196 agtaataaatgggaaagagaaattataactaattttacagaaatattcttgg 247  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  14306270 agtaataaatgggaaagagaaattataactaattttacagaaatattattgg 14306321  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 98 - 160
Target Start/End: Original strand, 2854436 - 2854498
Alignment:
Q  98 gtattttcaagacaaaatttctttacgtgaatttcttaaacaatcctcttagagcacttgtta 160  Q
    ||||||||||||||||||||||||| ||| ||| ||||||| || | ||||| ||||||||||    
T  2854436 gtattttcaagacaaaatttctttatgtggattccttaaacgatgcccttagggcacttgtta 2854498  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 98 - 162
Target Start/End: Complemental strand, 41735467 - 41735403
Alignment:
Q  98 gtattttcaagacaaaatttctttacgtgaatttcttaaacaatcctcttagagcacttgttaac 162  Q
    |||||||||||||| |||||||||  |||| |||||||||||||  |||||| ||||||||||||    
T  41735467 gtattttcaagacataatttctttttgtgagtttcttaaacaatattcttagggcacttgttaac 41735403  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 98 - 165
Target Start/End: Complemental strand, 41621953 - 41621886
Alignment:
Q  98 gtattttcaagacaaaatttctttacgtgaatttcttaaacaatcctcttagagcacttgttaaccaa 165  Q
    |||||||||||||| |||||||||  |||  || |||||||||| | ||||| |||||||||||||||    
T  41621953 gtattttcaagacataatttctttttgtgggttccttaaacaatgcccttagggcacttgttaaccaa 41621886  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 160
Target Start/End: Original strand, 25120018 - 25120080
Alignment:
Q  98 gtattttcaagacaaaatttctttacgtgaatttcttaaacaatcctcttagagcacttgtta 160  Q
    |||||||||||||| |||||||||  ||| ||| |||||||||| | ||||| ||||||||||    
T  25120018 gtattttcaagacacaatttctttttgtggattccttaaacaatacccttagggcacttgtta 25120080  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 160
Target Start/End: Complemental strand, 40088 - 40026
Alignment:
Q  98 gtattttcaagacaaaatttctttacgtgaatttcttaaacaatcctcttagagcacttgtta 160  Q
    ||||||||||||||||||||||||| |||  || ||||||||||   ||||| ||||||||||    
T  40088 gtattttcaagacaaaatttctttatgtgggttccttaaacaatgtccttagggcacttgtta 40026  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 140
Target Start/End: Complemental strand, 44455130 - 44455088
Alignment:
Q  98 gtattttcaagacaaaatttctttacgtgaatttcttaaacaa 140  Q
    ||||||||||||||||||||||||  |||| ||||||||||||    
T  44455130 gtattttcaagacaaaatttctttctgtgagtttcttaaacaa 44455088  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 162
Target Start/End: Original strand, 45249436 - 45249500
Alignment:
Q  98 gtattttcaagacaaaatttctttacgtgaatttcttaaacaatcctcttagagcacttgttaac 162  Q
    |||||||||||||| |||||||||  |||  || |||||||||| | ||||| ||||||||||||    
T  45249436 gtattttcaagacataatttctttttgtgggttccttaaacaatgcccttagggcacttgttaac 45249500  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 148
Target Start/End: Original strand, 1056554 - 1056606
Alignment:
Q  96 gagtattttcaagacaaaatttctttacgtgaatttcttaaacaatcctctta 148  Q
    ||||||||||||| ||||||||||||   ||| ||||||||||||| ||||||    
T  1056554 gagtattttcaaggcaaaatttctttttatgagtttcttaaacaatgctctta 1056606  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 162
Target Start/End: Original strand, 42410272 - 42410336
Alignment:
Q  98 gtattttcaagacaaaatttctttacgtgaatttcttaaacaatcctcttagagcacttgttaac 162  Q
    |||||||||||||| |||||||||  |||  || |||||||||| | ||||| ||||||||||||    
T  42410272 gtattttcaagacataatttctttttgtgggttccttaaacaatgcccttagggcacttgttaac 42410336  T

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