View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11386A_low_27 (Length: 446)
Name: NF11386A_low_27
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386A_low_27 |
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Alignment Details
Target: chr7 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 9 - 440
Target Start/End: Original strand, 4301855 - 4302284
Alignment:
| Q |
9 |
tggtgttgcacttgggattgtatttgagaaaagaggaattgataaaacacaacccttgaaatttgtaactgatgaggtttatatagtggggggacacatc |
108 |
Q |
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| T |
4301855 |
tggtattgcacttgggattgtatttgagaaaagaggaattgataaaacacaacccttgaaatttgtaactgatgaggtttatatagtggggggacacatc |
4301954 |
T |
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| Q |
109 |
agcagtaatgcagaagacaaaggaaatgtgttttcagttctttcaaaccaattttcagaattcatcatgttcctagctgccaacacagtgttcgaatcca |
208 |
Q |
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| T |
4301955 |
agcagtaatgcagaagacaaaggaaatgtgttttcagttctttcaaaccaattttcagaattcatcatgttcctagctgccaaaacagtgttcgaatcca |
4302054 |
T |
|
| Q |
209 |
ttgattacccagcggcaagtgagttcgtttgcaactattataggtaggttgtgtgggacaagaaaaacatcagacgatgtattttccaagcgtttgttgt |
308 |
Q |
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| T |
4302055 |
ttgattacccagcggcaagtgagttcgtttgcaactattataggtaggttgtgtgggacaagaaaaacaccagacgatgtattttccaagcgtttgttgt |
4302154 |
T |
|
| Q |
309 |
caagcctacaccatttgaagcaaattcatgacagatatcaccatatggacacattcctataagagaagttctaggtgcagtagtcttggttgataaggct |
408 |
Q |
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| T |
4302155 |
caagcctacaccatttgaagcaaattcatgacagatatcaccatatggacacattcc--taagagaagttctaggtgcagtagtcttggttgataaggct |
4302252 |
T |
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| Q |
409 |
tcaattcatatcctaaatggaactgcacttgt |
440 |
Q |
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| T |
4302253 |
tcaattcatatcctaaatggaactgcacttgt |
4302284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 79; Significance: 9e-37; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 226 - 356
Target Start/End: Complemental strand, 49100586 - 49100456
Alignment:
| Q |
226 |
agtgagttcgtttgcaactattataggtaggttgtgtgggacaagaaaaacatcagacgatgtattttccaagcgtttgttgtcaagcctacaccatttg |
325 |
Q |
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| T |
49100586 |
agtgagtttgtttgcaacgtttataggtaggctgcacgggacaagaaaaacaccagaggttgcattttccaagcgtctgttgtcaagcctataccatttg |
49100487 |
T |
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| Q |
326 |
aagcaaattcatgacagatatcaccatatgg |
356 |
Q |
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| T |
49100486 |
aagcaaattcatgacagatatcaccatatgg |
49100456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 92 - 184
Target Start/End: Complemental strand, 49112546 - 49112454
Alignment:
| Q |
92 |
tagtggggggacacatcagcagtaatgcagaagacaaaggaaatgtgttttcagttctttcaaaccaattttcagaattcatcatgttcctag |
184 |
Q |
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| T |
49112546 |
tagtgggggggcacatcagcagtaatgcagaagacaaaggaaatgtgttttcagttccttctaaccaatatgcagaattcaacatgttcctag |
49112454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 82 - 184
Target Start/End: Complemental strand, 49100762 - 49100660
Alignment:
| Q |
82 |
gaggtttatatagtggggggacacatcagcagtaatgcagaagacaaaggaaatgtgttttcagttctttcaaaccaattttcagaattcatcatgttcc |
181 |
Q |
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||||||||| ||||||| |||||||||||||| ||| ||||||||||||||||||| |||||||| | ||||||||||| | ||||||||| |||||||| |
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| T |
49100762 |
gaggtttatgtagtgggaggacacatcagcaggaatacagaagacaaaggaaatgttttttcagtcccttcaaaccaatatgcagaattcaacatgttcc |
49100663 |
T |
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| Q |
182 |
tag |
184 |
Q |
| |
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||| |
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| T |
49100662 |
tag |
49100660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 205 - 356
Target Start/End: Complemental strand, 49112401 - 49112250
Alignment:
| Q |
205 |
tccattgattacccagcggcaagtgagttcgtttgcaactattataggtaggttgtgtgggacaagaaaaacatcagacgatgtattttccaagcgtttg |
304 |
Q |
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| T |
49112401 |
tccattgagcactcagcgccaagtgagttcatttgcaactattataggtagattagaagggacaagaaaaacatcagaggttgtgtttaccaagagtcta |
49112302 |
T |
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| Q |
305 |
ttgtcaagcctacaccatttgaagcaaattcatgacagatatcaccatatgg |
356 |
Q |
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| T |
49112301 |
ttgtcaagcctaaaccgtttgaagcaaaccaataacagatattaccatatgg |
49112250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 355 - 412
Target Start/End: Complemental strand, 49100306 - 49100251
Alignment:
| Q |
355 |
ggacacattcctataagagaagttctaggtgcagtagtcttggttgataaggcttcaa |
412 |
Q |
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| T |
49100306 |
ggacacattcctag--gagaaattctaggtgcagtagtcttggctgaaaaggcttcaa |
49100251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 27 - 85
Target Start/End: Original strand, 5085365 - 5085423
Alignment:
| Q |
27 |
tgtatttgagaaaagaggaattgataaaacacaacccttgaaatttgtaactgatgagg |
85 |
Q |
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| T |
5085365 |
tgtattcgagaaaagaggaattgatgaaacacaacccttgaaatttgtaactgatgagg |
5085423 |
T |
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