View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11386A_low_271 (Length: 259)
Name: NF11386A_low_271
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386A_low_271 |
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Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 40471595 - 40471837
Alignment:
| Q |
1 |
gggcaataattccagttccaacacggtttcgccgccaccgccacctcctcagtcgtcaaggaccaacagtactgtacaccccagctagctctagtttatg |
100 |
Q |
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| T |
40471595 |
gggcaataattccagttccaacacggtttcgccgc------cacctcctcagtcgtcaagggccaacagtactgtacacccgagctagctctagtctatg |
40471688 |
T |
|
| Q |
101 |
ctattagtataatcaaatattcctttttcaaggtttatactattactgatctatctgcattatattgtaaaccagatacatcaataattcaataaacctg |
200 |
Q |
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| T |
40471689 |
ctattagtattatcaaatattcctttttcagggtttatactattactgatctatctgcattatattataaaccagatacatcaataattcaataaacgtg |
40471788 |
T |
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| Q |
201 |
aataaggaatatttgtttatagtagtgatcggaaggagtactgaatatt |
249 |
Q |
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| T |
40471789 |
aataaggaatatttgtttatagtagtgatcggaaggagtactgaatatt |
40471837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 161 - 240
Target Start/End: Original strand, 30206538 - 30206618
Alignment:
| Q |
161 |
tatattgtaaaccagatacatcaataattcaataaacctgaataa-ggaatatttgtttatagtagtgatcggaaggagta |
240 |
Q |
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| T |
30206538 |
tatattataaaccagatacatcaattattcaatgaatctgaaaaaaggaatatttgtttataatagtgaccggaaggagta |
30206618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 168 - 221
Target Start/End: Original strand, 23471090 - 23471143
Alignment:
| Q |
168 |
taaaccagatacatcaataattcaataaacctgaataaggaatatttgtttata |
221 |
Q |
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| T |
23471090 |
taaacaagatacatcagttattcaatgaacctgaaaaaggaatatttgcttata |
23471143 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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