View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11386A_low_273 (Length: 258)
Name: NF11386A_low_273
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386A_low_273 |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 23 - 250
Target Start/End: Complemental strand, 49289736 - 49289509
Alignment:
| Q |
23 |
agttatacttgaagttttggtgtgttgtttgttgagttaataagccaaacgtcgcatgcttatataggggtttttgaacggaagaaattaaggcttgttg |
122 |
Q |
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| T |
49289736 |
agttatacttgaagttttggtgtgttgtttgttgagttaataagccaaacgtggcatgcttatataggggtttttgaagggaagaaattaaggcttgttg |
49289637 |
T |
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| Q |
123 |
ttgggaaagaaaagtagaaaagtggagaatcgtcgattagatatttgggtcactttcaaaatcattgaaagtgattcatcaattaagtccacttttacta |
222 |
Q |
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| T |
49289636 |
ttggaaaagaaaagtagaaaagtggagaatcgtcgattagatatttgggtcactttcaaaatcattgaaagtgattgatcaattaagtccacttttacta |
49289537 |
T |
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| Q |
223 |
ctagctagtacaaacgattatattcttc |
250 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
49289536 |
ctagctagtacaaacgattatattcttc |
49289509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 23 - 250
Target Start/End: Complemental strand, 49296687 - 49296460
Alignment:
| Q |
23 |
agttatacttgaagttttggtgtgttgtttgttgagttaataagccaaacgtcgcatgcttatataggggtttttgaacggaagaaattaaggcttgttg |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
49296687 |
agttatacttgaagttttggtgtgttgtttgttgagttaataagccaaacgtggcatgcttatataggggtttttgaagggaagaaattaaggcttgttg |
49296588 |
T |
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| Q |
123 |
ttgggaaagaaaagtagaaaagtggagaatcgtcgattagatatttgggtcactttcaaaatcattgaaagtgattcatcaattaagtccacttttacta |
222 |
Q |
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| T |
49296587 |
ttggaaaagaaaagtagaaaagtggagaatcgtcgattagatgtttgggtcactttcaaaatcattgaaagtgattgatcaattaagtccacttttacta |
49296488 |
T |
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| Q |
223 |
ctagctagtacaaacgattatattcttc |
250 |
Q |
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| T |
49296487 |
ctagctagtacaaacgattatattcttc |
49296460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 23 - 211
Target Start/End: Complemental strand, 49303417 - 49303232
Alignment:
| Q |
23 |
agttatacttgaagttttggtgtgttgtttgttgagttaataagccaaacgtcgcatgcttatataggggtttttgaacggaagaaattaaggcttgttg |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| | |
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| T |
49303417 |
agttatacttgaagttttggtgtgttgtttgttgagttaataagccaaacgtggcatgcttatataggggtttttgaagggaagaaattaaggctt---g |
49303321 |
T |
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| Q |
123 |
ttgggaaagaaaagtagaaaagtggagaatcgtcgattagatatttgggtcactttcaaaatcattgaaagtgattcatcaattaagtc |
211 |
Q |
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| T |
49303320 |
ttgggaaagaaaagtagaaaagtggagaatcgtccattagatatttgggtcattttcaaaatcgttgaaagtgattgatcaattaagtc |
49303232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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