View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11386A_low_278 (Length: 256)
Name: NF11386A_low_278
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386A_low_278 |
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Alignment Details
Target: chr1 (Bit Score: 92; Significance: 9e-45; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 21 - 243
Target Start/End: Original strand, 46343728 - 46343948
Alignment:
| Q |
21 |
agtacatatagttatagcacacaacctaagcttacgagagtgttgtagtcttctaaatactgcaaatgnnnnnnnnnnnnnnnnnnnnnnnaaacgacat |
120 |
Q |
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| T |
46343728 |
agtacatatagttatagcacacaacctaagcttacgagagtgttgtagtcttctaaatactgcaaatgtttttgtttttaattttaattttaaacgacat |
46343827 |
T |
|
| Q |
121 |
cttagcaaaatgccaccaaataaagattcttatttgatatcttccnnnnnnnnnnnnnnnnnnnctgatttgattacttttatgtttggtgactagttta |
220 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
46343828 |
cttagcaaaatgccaccaaataaagattcttatttgatatcttcc--aaaaaaaaaaaaaaaaactgatttgattacttttatgtttggtgactagttta |
46343925 |
T |
|
| Q |
221 |
gtgacatgaaagtcgattgatat |
243 |
Q |
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||||||||||||||||||||||| |
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| T |
46343926 |
gtgacatgaaagtcgattgatat |
46343948 |
T |
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