View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11386A_low_28 (Length: 445)

Name: NF11386A_low_28
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11386A_low_28
NF11386A_low_28
[»] chr6 (2 HSPs)
chr6 (194-437)||(34691008-34691251)
chr6 (7-129)||(34690822-34690944)
[»] chr2 (12 HSPs)
chr2 (194-437)||(26988933-26989176)
chr2 (7-129)||(26988746-26988868)
chr2 (7-73)||(27076447-27076513)
chr2 (7-90)||(21432814-21432896)
chr2 (17-73)||(27028074-27028130)
chr2 (7-71)||(27099551-27099615)
chr2 (9-67)||(27151628-27151687)
chr2 (249-329)||(27028148-27028237)
chr2 (297-337)||(27076180-27076220)
chr2 (245-297)||(27076251-27076303)
chr2 (380-437)||(27076099-27076156)
chr2 (401-437)||(21433246-21433282)


Alignment Details
Target: chr6 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 194 - 437
Target Start/End: Original strand, 34691008 - 34691251
Alignment:
Q  194 cattgtaacttactgtcatagagcatgagacctcgatcttattannnnnnncatcttttgctgaaaggctaaaatgctggcattatacagctttcttggt 293  Q
    ||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||    
T  34691008 cattgtaacttactgtcatagagcatgagacctcgatcttattatttttttcatcttttgctgaaaggctaaaatgctggcattatacagctttcttggt 34691107  T
Q  294 ttgcagttgtgtctgttaaatgcttttggaaagcttacaacaagatttatgcattctttgttttcgattacactgaaaaatttgcagaataaacattcgt 393  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34691108 ttgcagttgtgtctgttaaatgcttttggaaagcttacaacaagctttatgcattctttgttttcgattacactgaaaaatttgcagaataaacattcgt 34691207  T
Q  394 tcgtgttctttggttgctaaaagacagatatcattatattattc 437  Q
    ||||||||||||||||||||||||||||||||||| ||||||||    
T  34691208 tcgtgttctttggttgctaaaagacagatatcattgtattattc 34691251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 7 - 129
Target Start/End: Original strand, 34690822 - 34690944
Alignment:
Q  7 ttcccttcatcgtttgagcccagaagaaatgcatttaaaaacccatacagattctctagaaggtaatatgccaaccgatgcaccttttcttttcgtaatt 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34690822 ttcccttcatcgtttgagcccagaagaaatgcatttaaaaacccatacagattctctagaaggtaatatgccaaccgatgcaccttttcttttcgtaatt 34690921  T
Q  107 gtcattattagtatttattagaa 129  Q
    |||||||||||||||||||||||    
T  34690922 gtcattattagtatttattagaa 34690944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 194 - 437
Target Start/End: Original strand, 26988933 - 26989176
Alignment:
Q  194 cattgtaacttactgtcatagagcatgagacctcgatcttattannnnnnncatcttttgctgaaaggctaaaatgctggcattatacagctttcttggt 293  Q
    ||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||    
T  26988933 cattgtaacttactgtcatagagcatgagacctcgatcttattatttttttcatcttttgctgaaaggctaaaatgctggcattatacagctttcttggt 26989032  T
Q  294 ttgcagttgtgtctgttaaatgcttttggaaagcttacaacaagatttatgcattctttgttttcgattacactgaaaaatttgcagaataaacattcgt 393  Q
    ||||||||||||||||||||||||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26989033 ttgcagttgtgtctgttaaatgcttttggaaagtttgcaacaagctttatgcattctttgttttcgattacactgaaaaatttgcagaataaacattcgt 26989132  T
Q  394 tcgtgttctttggttgctaaaagacagatatcattatattattc 437  Q
    ||||||||||||||||||||||||||||||||||| ||||||||    
T  26989133 tcgtgttctttggttgctaaaagacagatatcattgtattattc 26989176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 7 - 129
Target Start/End: Original strand, 26988746 - 26988868
Alignment:
Q  7 ttcccttcatcgtttgagcccagaagaaatgcatttaaaaacccatacagattctctagaaggtaatatgccaaccgatgcaccttttcttttcgtaatt 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26988746 ttcccttcatcgtttgagcccagaagaaatgcatttaaaaacccatacagattctctagaaggtaatatgccaaccgatgcaccttttcttttcgtaatt 26988845  T
Q  107 gtcattattagtatttattagaa 129  Q
    ||||| |||||||||||||||||    
T  26988846 gtcataattagtatttattagaa 26988868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 7 - 73
Target Start/End: Complemental strand, 27076513 - 27076447
Alignment:
Q  7 ttcccttcatcgtttgagcccagaagaaatgcatttaaaaacccatacagattctctagaaggtaat 73  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  27076513 ttcccttcatcgtttgagcccagaagaaatgcatttaaaaactcatacagattctctagaaggtaat 27076447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 7 - 90
Target Start/End: Original strand, 21432814 - 21432896
Alignment:
Q  7 ttcccttcatcgtttgagcccagaagaaatgcatttaaaaacccatacagattctctagaaggtaatatgccaaccgatgcacc 90  Q
    |||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| || |||||||| |||||||    
T  21432814 ttcccttcatcgtttgagcccagaagaaatgcatttaaaaacctgtacagattctctagaaggt-atgtgccaaccaatgcacc 21432896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 27028074 - 27028130
Alignment:
Q  17 cgtttgagcccagaagaaatgcatttaaaaacccatacagattctctagaaggtaat 73  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  27028074 cgtttgagctcagaagaaatgcatttaaaaacccatacagattctctagaaggtaat 27028130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 7 - 71
Target Start/End: Complemental strand, 27099615 - 27099551
Alignment:
Q  7 ttcccttcatcgtttgagcccagaagaaatgcatttaaaaacccatacagattctctagaaggta 71  Q
    ||||||||||| ||||| |||| |||||||||| || |||||| |||||||||||||||||||||    
T  27099615 ttcccttcatcctttgaacccaaaagaaatgcaattgaaaacctatacagattctctagaaggta 27099551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 9 - 67
Target Start/End: Original strand, 27151628 - 27151687
Alignment:
Q  9 cccttcatcgtttgagccc-agaagaaatgcatttaaaaacccatacagattctctagaa 67  Q
    ||||||||| ||||||||| |||||||||||||||||||| | |||||||||||||||||    
T  27151628 cccttcatcatttgagccccagaagaaatgcatttaaaaatctatacagattctctagaa 27151687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 249 - 329
Target Start/End: Original strand, 27028148 - 27028237
Alignment:
Q  249 ttttgctgaaaggctaaaatgctggcattatacagctttcttggtttgc---------agttgtgtctgttaaatgcttttggaaagctt 329  Q
    ||||||||||||  | |||||||||||||||||||||||||||||||||         |||| ||| |||||||||||||||||||||||    
T  27028148 ttttgctgaaagcgtgaaatgctggcattatacagctttcttggtttgctagtgtcttagttatgtttgttaaatgcttttggaaagctt 27028237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 297 - 337
Target Start/End: Complemental strand, 27076220 - 27076180
Alignment:
Q  297 cagttgtgtctgttaaatgcttttggaaagcttacaacaag 337  Q
    ||||||||| ||||||||||||||||||||||| |||||||    
T  27076220 cagttgtgtttgttaaatgcttttggaaagcttgcaacaag 27076180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 245 - 297
Target Start/End: Complemental strand, 27076303 - 27076251
Alignment:
Q  245 catcttttgctgaaaggctaaaatgctggcattatacagctttcttggtttgc 297  Q
    ||||||||||||||||  | ||| || ||||||||||||||||||||||||||    
T  27076303 catcttttgctgaaagcgtgaaacgcaggcattatacagctttcttggtttgc 27076251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 437
Target Start/End: Complemental strand, 27076156 - 27076099
Alignment:
Q  380 gaataaacattcgttcgtgttctttggttgctaaaagacagatatcattatattattc 437  Q
    ||||||||| | |||| |||| |||||||||||||||||| ||||||||  |||||||    
T  27076156 gaataaacagttgttcatgttatttggttgctaaaagacatatatcattgaattattc 27076099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 401 - 437
Target Start/End: Original strand, 21433246 - 21433282
Alignment:
Q  401 ctttggttgctaaaagacagatatcattatattattc 437  Q
    |||| ||||||||||||||||||||||| ||||||||    
T  21433246 cttttgttgctaaaagacagatatcattgtattattc 21433282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University