View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11386A_low_280 (Length: 256)
Name: NF11386A_low_280
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386A_low_280 |
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Alignment Details
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 16 - 251
Target Start/End: Original strand, 26056830 - 26057065
Alignment:
| Q |
16 |
agattcacagtgggggctttacgactattgagttgattctattagagtagtctttacgactatttctgcaagatattgaactatcgtctgtatttttaat |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |
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| T |
26056830 |
agattcacagtgggggctttacgactattgagttgattctattagaatagtctttacgactatttctgcaagatatcgaactatcgtctgaatttttaat |
26056929 |
T |
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| Q |
116 |
acgaactatcgaattatatggttcattaaacctagtattacgggaattttaaaatcagttgagtgacactnnnnnnnctaacacgatattgtaaggtgac |
215 |
Q |
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|||| |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||| |
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| T |
26056930 |
acgagctatcgaattctatggttcattaaacctagtattatgggaattttaaaatcagttgagtgacactaaaaaaactaacacgatattgtaagatgac |
26057029 |
T |
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| Q |
216 |
atctacattttaaaatgtgttttgatgcatgttact |
251 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
26057030 |
atctacattttaaaatgtgttttgatgcatgttact |
26057065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 16 - 251
Target Start/End: Original strand, 26113480 - 26113716
Alignment:
| Q |
16 |
agattcacagtgggggctttacgactattgagttgattctattagagtagtctttacgactatttctgcaagatattgaactatcgtctgtatttttaat |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| ||||||||| |
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| T |
26113480 |
agattcacagtgggggctttacgactattgagttgattctattagaaaagtctttacgactatttctgcaagatatcgaactatcgtctgaatttttaat |
26113579 |
T |
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| Q |
116 |
acgaactatcgaattatatggttcattaaacctagtattacgggaattttaaaatcagttgagtgacact-nnnnnnnctaacacgatattgtaaggtga |
214 |
Q |
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| T |
26113580 |
acgagctatcgaattctatggttcattaaacctagtattatgggaattttaaaatcagtcgagtgacactaaaaaaaactaacacgatattgtaaggtga |
26113679 |
T |
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| Q |
215 |
catctacattttaaaatgtgttttgatgcatgttact |
251 |
Q |
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| T |
26113680 |
catctgcattttaaaatgtgttttgatgcatgttact |
26113716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 122 - 183
Target Start/End: Original strand, 26090494 - 26090555
Alignment:
| Q |
122 |
tatcgaattatatggttcattaaacctagtattacgggaattttaaaatcagttgagtgaca |
183 |
Q |
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||||||| | |||||||||| || ||||||||||||||||||||||||||| |||||||||| |
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| T |
26090494 |
tatcgaactctatggttcataaatcctagtattacgggaattttaaaatcatttgagtgaca |
26090555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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