View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11386A_low_285 (Length: 255)
Name: NF11386A_low_285
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386A_low_285 |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 6 - 243
Target Start/End: Original strand, 39081886 - 39082121
Alignment:
| Q |
6 |
aataagtagctcaactgcttatattttcaattattcaatagatttctatcttactgaccatcatcgatatatacattacatttaagtagcaaagatatat |
105 |
Q |
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| T |
39081886 |
aataagtagctcaactgcttatattttcatttattcaatagatttctatcttacttaccatcatcgatat--acattacatttaaatagcaaagatatat |
39081983 |
T |
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| Q |
106 |
taagaattgtaactgggacgaagttctcgaacatattactttagtagaagcttttaaatacaaaaatatggaacaaactagtacaaacaagtagtaacca |
205 |
Q |
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| T |
39081984 |
taagaattgtaactgggaagaagttctcgaacatattactttagtagaagcttttaaatacaacaatatggaacaaactagtacaaacaagtagtaacca |
39082083 |
T |
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| Q |
206 |
aataattgaaacagcaaagtgacatatccttaaatatt |
243 |
Q |
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| T |
39082084 |
aataattgaaacagcaaagtgacatatccttaaatatt |
39082121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 10 - 60
Target Start/End: Original strand, 39086307 - 39086357
Alignment:
| Q |
10 |
agtagctcaactgcttatattttcaattattcaatagatttctatcttact |
60 |
Q |
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| T |
39086307 |
agtagctcaactgcttatattttcatttattgaatagatttcaatcttact |
39086357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 191 - 243
Target Start/End: Original strand, 39086809 - 39086861
Alignment:
| Q |
191 |
aacaagtagtaaccaaataattgaaacagcaaagtgacatatccttaaatatt |
243 |
Q |
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| T |
39086809 |
aacaagtagaaaccaaataattgaaacagcaatgtaacatatccttaattatt |
39086861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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