View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11386A_low_290 (Length: 253)

Name: NF11386A_low_290
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11386A_low_290
NF11386A_low_290
[»] chr4 (1 HSPs)
chr4 (1-239)||(37875851-37876095)
[»] chr2 (1 HSPs)
chr2 (1-239)||(23895586-23895830)
[»] chr8 (8 HSPs)
chr8 (65-154)||(18138922-18139011)
chr8 (65-148)||(18097242-18097325)
chr8 (152-224)||(18138819-18138891)
chr8 (1-58)||(18097151-18097208)
chr8 (1-58)||(18139045-18139102)
chr8 (93-151)||(18106388-18106446)
chr8 (151-197)||(18106479-18106525)
chr8 (151-224)||(18097361-18097434)


Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 37875851 - 37876095
Alignment:
Q  1 gcaattaaaacctaattgatagatataaatttcctatttactctactctgtttatgtaatgtggaaaagcctaaggccttgttgcttcaataaataatta 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37875851 gcaattaaaacctaattgattgatataaatttcctatttactctactatgtttatgtaatgtggaaaagcctaaggccttgttgcttcaataaataatta 37875950  T
Q  101 gttttaagccattcaggcatgttgcgcttagag------tgtgccacatgatcagtgaattgttttgttgcttcagaatgatgactctccacatcatatg 194  Q
    |||||||||||||||||||||||||||||||||      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37875951 gttttaagccattcaggcatgttgcgcttagagtactgctgtgccacatgatcagtgaattgttttgttgcttcagaatgatgactctccacatcatatg 37876050  T
Q  195 cctttcctcagcaccaaaggtatggtattggtttatttgcttcat 239  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  37876051 cctttcctcagcaccaaaggtatggtattggtttatttgcttcat 37876095  T

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Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 23895830 - 23895586
Alignment:
Q  1 gcaattaaaacctaattgatagatataaatttcctatttactctactctgtttatgtaatgtggaaaagcctaaggccttgttgcttcaataaataatta 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23895830 gcaattaaaacctaattgattgatataaatttcctatttactctactatgtttatgtaatgtggaaaagcctaaggccttgttgcttcaataaataatta 23895731  T
Q  101 gttttaagccattcaggcatgttgcgcttagag------tgtgccacatgatcagtgaattgttttgttgcttcagaatgatgactctccacatcatatg 194  Q
    |||||||||||||||||||||||||||||||||      |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23895730 gttttaagccattcaggcatgttgcgcttagagtactgctgtgccacatgatcagtgaattgttttgttgcttcagaatgatgactctccacatcatatg 23895631  T
Q  195 cctttcctcagcaccaaaggtatggtattggtttatttgcttcat 239  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  23895630 cctttcctcagcaccaaaggtatggtattggtttatttgcttcat 23895586  T

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Target: chr8 (Bit Score: 62; Significance: 7e-27; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 65 - 154
Target Start/End: Complemental strand, 18139011 - 18138922
Alignment:
Q  65 aaaagcctaaggccttgttgcttcaataaataattagttttaagccattcaggcatgttgcgcttagagtgtgccacatgatcagtgaat 154  Q
    |||||| | |||||||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||||| |||||| |||||    
T  18139011 aaaagcttgaggccttgttgcttcaattagtaattagttttaagccattcaggcatgttgtgcttagagtgtgccacttgatcaatgaat 18138922  T

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Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 65 - 148
Target Start/End: Original strand, 18097242 - 18097325
Alignment:
Q  65 aaaagcctaaggccttgttgcttcaataaataattagttttaagccattcaggcatgttgcgcttagagtgtgccacatgatca 148  Q
    |||||| ||||| |||||| ||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||| ||||||    
T  18097242 aaaagcttaaggtcttgtttcttcaattaataattagttttaagccattcaggcatgttgtgcttagactgtgccacttgatca 18097325  T

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Target: chr8; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 152 - 224
Target Start/End: Complemental strand, 18138891 - 18138819
Alignment:
Q  152 aattgttttgttgcttcagaatgatgactctccacatcatatgcctttcctcagcaccaaaggtatggtattg 224  Q
    |||||||||||||||||||||||| || | |||||||||||  |||||| |||||||||||||||||||||||    
T  18138891 aattgttttgttgcttcagaatgacgattttccacatcatacacctttcgtcagcaccaaaggtatggtattg 18138819  T

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Target: chr8; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 18097151 - 18097208
Alignment:
Q  1 gcaattaaaacctaattgatagatataaatttcctatttactctactctgtttatgta 58  Q
    |||||||||||||||||||| || ||||||| ||||||||||||||||||||||||||    
T  18097151 gcaattaaaacctaattgattgaaataaattgcctatttactctactctgtttatgta 18097208  T

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Target: chr8; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 18139102 - 18139045
Alignment:
Q  1 gcaattaaaacctaattgatagatataaatttcctatttactctactctgtttatgta 58  Q
    |||||||||||||||||||| |||||||||| ||||||||||||||| ||||||||||    
T  18139102 gcaattaaaacctaattgattgatataaattgcctatttactctactttgtttatgta 18139045  T

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Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 93 - 151
Target Start/End: Original strand, 18106388 - 18106446
Alignment:
Q  93 aataattagttttaagccattcaggcatgttgcgcttagagtgtgccacatgatcagtg 151  Q
    |||||||||||||||||||||| ||||||||| || |||||| ||||||||||||||||    
T  18106388 aataattagttttaagccattcgggcatgttgtgcctagagtatgccacatgatcagtg 18106446  T

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Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 151 - 197
Target Start/End: Original strand, 18106479 - 18106525
Alignment:
Q  151 gaattgttttgttgcttcagaatgatgactctccacatcatatgcct 197  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||    
T  18106479 gaattgttttgttgcttcagaatgatgattctccacatcatatgcct 18106525  T

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Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 151 - 224
Target Start/End: Original strand, 18097361 - 18097434
Alignment:
Q  151 gaattgttttgttgcttcagaatgatgactctccacatcatatgcctttcctcagcaccaaaggtatggtattg 224  Q
    ||||||||||||||||||||||||| || | |||||||||||  |||||  ||||| |||||||||||||||||    
T  18097361 gaattgttttgttgcttcagaatgacgattttccacatcatactccttttgtcagctccaaaggtatggtattg 18097434  T

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