View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11386A_low_293 (Length: 252)

Name: NF11386A_low_293
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11386A_low_293
NF11386A_low_293
[»] chr7 (3 HSPs)
chr7 (1-246)||(3929968-3930213)
chr7 (1-247)||(3928616-3928862)
chr7 (1-225)||(21317471-21317695)
[»] chr2 (5 HSPs)
chr2 (1-225)||(13576245-13576469)
chr2 (1-216)||(34571453-34571668)
chr2 (1-102)||(34562659-34562760)
chr2 (26-216)||(34578946-34579136)
chr2 (26-216)||(34584695-34584885)
[»] chr8 (7 HSPs)
chr8 (1-222)||(43479681-43479902)
chr8 (1-222)||(25865600-25865821)
chr8 (5-222)||(38799395-38799612)
chr8 (5-222)||(38821905-38822122)
chr8 (1-246)||(26592044-26592289)
chr8 (5-180)||(41943886-41944061)
chr8 (1-100)||(44343977-44344076)
[»] scaffold0197 (1 HSPs)
scaffold0197 (1-225)||(30909-31132)
[»] chr5 (7 HSPs)
chr5 (1-222)||(12531392-12531613)
chr5 (1-222)||(12547006-12547227)
chr5 (5-146)||(9866668-9866809)
chr5 (1-99)||(9870004-9870102)
chr5 (13-156)||(9894610-9894752)
chr5 (14-111)||(38735528-38735625)
chr5 (8-45)||(12538675-12538712)
[»] chr4 (6 HSPs)
chr4 (1-228)||(24860440-24860667)
chr4 (2-247)||(34748630-34748875)
chr4 (26-109)||(53290749-53290832)
chr4 (122-162)||(44771097-44771137)
chr4 (137-216)||(40035830-40035909)
chr4 (5-96)||(40036062-40036153)
[»] chr1 (3 HSPs)
chr1 (65-174)||(17769233-17769342)
chr1 (1-103)||(7594138-7594240)
chr1 (65-174)||(1539185-1539294)
[»] chr3 (1 HSPs)
chr3 (65-173)||(27440846-27440954)


Alignment Details
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 3929968 - 3930213
Alignment:
Q  1 aatatccttaggcataatggtaactctcttagcatgaatagcacaaagattcgtatcctcaaacaaaccaacaagatacgcttcagcagcttcttgaagt 100  Q
    ||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||     
T  3929968 aatatccttcggcataatagtaactctcttagcatgaatggcacaaagattcgtatcttcaaacaaaccaacaagatacgcttcagcagcttcttgaaga 3930067  T
Q  101 gcagaaacagcactactctgaaatctgagatcagttttgaaatcctgagcgatttcacgaaccaatctttggaatggaagtttcctaatgagaagctcag 200  Q
    |||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  3930068 gcagaaacagcactactctgaaatcgaagatcagttttgaaatcctgagcgatttcacgaaccaatctttggaatggaagtttcctaatgagaagttcag 3930167  T
Q  201 tgctcttctgatactttcggatttcgcgcaatgcgactgttcctgg 246  Q
    |||||||||||||||| ||||| || || | |||||||||||||||    
T  3930168 tgctcttctgatacttgcggatctcacgaagtgcgactgttcctgg 3930213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 3928616 - 3928862
Alignment:
Q  1 aatatccttaggcataatggtaactctcttagcatgaatagcacaaagattcgtatcctcaaacaaaccaacaagatacgcttcagcagcttcttgaagt 100  Q
    |||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||||| | ||||||||||   |||||||||     
T  3928616 aatatccttaggcacaatagtaactctcttagcatgaatagcacaaagattcatatcttcaaacaaaccaacaatacacgcttcagcgatttcttgaaga 3928715  T
Q  101 gcagaaacagcactactctgaaatctgagatcagttttgaaatcctgagcgatttcacgaaccaatctttggaatggaagtttcctaatgagaagctcag 200  Q
    ||||||||||| ||  |||| |||| ||||||||||||||||||||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||    
T  3928716 gcagaaacagcgctgatctggaatcggagatcagttttgaaatcctgagcgatttcatgaaccaatcttttgaaaggaagtttcctaatgagaagctcag 3928815  T
Q  201 tgctcttctgatactttcggatttcgcgcaatgcgactgttcctggt 247  Q
    || |||| |||||||| | |||||| |||||||||||||||||||||    
T  3928816 tgatcttttgatacttcctgatttcacgcaatgcgactgttcctggt 3928862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 21317695 - 21317471
Alignment:
Q  1 aatatccttaggcataatggtaactctcttagcatgaatagcacaaagattcgtatcctcaaacaaaccaacaagatacgcttcagcagcttcttgaagt 100  Q
    |||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||| |||||||| |||||||||||     
T  21317695 aatatccttaggcataatagtaactctcttagcatgaatagcgcaaagatttgtatcttcaaacaaaccaacaagataagcttcagccgcttcttgaaga 21317596  T
Q  101 gcagaaacagcactactctgaaatctgagatcagttttgaaatcctgagcgatttcacgaaccaatctttggaatggaagtttcctaatgagaagctcag 200  Q
    |||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||| |  | ||||||||||||||| || || ||||||||||    
T  21317595 gcagaaacagcactgctctggaatctgagatcggttttgaaatcctgagcgatttcacgaacaagacgttggaatggaagttttcttatcagaagctcag 21317496  T
Q  201 tgctcttctgatactttcggatttc 225  Q
    |||||||||| ||||| ||||||||    
T  21317495 tgctcttctggtacttgcggatttc 21317471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 165; Significance: 2e-88; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 13576469 - 13576245
Alignment:
Q  1 aatatccttaggcataatggtaactctcttagcatgaatagcacaaagattcgtatcctcaaacaaaccaacaagatacgcttcagcagcttcttgaagt 100  Q
    |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||     
T  13576469 aatatccttaggcataatagtaaccctcttagcatgaatagcacaaagattcgtatcctcaaacaaaccaacaagataagcttcagcagcttcttgaaga 13576370  T
Q  101 gcagaaacagcactactctgaaatctgagatcagttttgaaatcctgagcgatttcacgaaccaatctttggaatggaagtttcctaatgagaagctcag 200  Q
    |||||||||||||| || ||||| | |||||| ||||||||||||||||| ||||| ||||||||||||||||||||||| ||||| ||||||||||| |    
T  13576369 gcagaaacagcactgctttgaaaacggagatccgttttgaaatcctgagcaatttctcgaaccaatctttggaatggaagcttccttatgagaagctcgg 13576270  T
Q  201 tgctcttctgatactttcggatttc 225  Q
    |||||||||||||||| ||||||||    
T  13576269 tgctcttctgatacttgcggatttc 13576245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 34571453 - 34571668
Alignment:
Q  1 aatatccttaggcataatggtaactctcttagcatgaatagcacaaagattcgtatcctcaaacaaaccaacaagatacgcttcagcagcttcttgaagt 100  Q
    |||||||||||||||||||||||| |||||||||||||| ||||| | ||| |||||||||||||||||||| | ||| ||||| || ||||| ||||||    
T  34571453 aatatccttaggcataatggtaaccctcttagcatgaattgcacacaaattggtatcctcaaacaaaccaaccaaatatgcttccgctgcttcctgaagt 34571552  T
Q  101 gcagaaacagcactactctgaaatctgagatcagttttgaaatcctgagcgatttcacgaaccaatctttggaatggaagtttcctaatgagaagctcag 200  Q
    ||   ||| |||   ||||| ||||  | ||| || |||||||||||||| ||||||||||| |  |  |||||||||||||| |  || | ||| || |    
T  34571553 gcgagaaccgcatggctctggaatcgtaaatccgtcttgaaatcctgagcaatttcacgaacaagacgctggaatggaagtttacggatcaaaagttcgg 34571652  T
Q  201 tgctcttctgatactt 216  Q
    | ||||||||||||||    
T  34571653 tactcttctgatactt 34571668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 34562659 - 34562760
Alignment:
Q  1 aatatccttaggcataatggtaactctcttagcatgaatagcacaaagattcgtatcctcaaacaaaccaacaagatacgcttcagcagcttcttgaagt 100  Q
    |||||||||||||||||||||||| |||||||||||||| ||||| | ||| |||||||||||||||||||| | ||| ||||| || ||||| ||||||    
T  34562659 aatatccttaggcataatggtaaccctcttagcatgaattgcacacaaattggtatcctcaaacaaaccaaccaaatatgcttccgctgcttcctgaagt 34562758  T
Q  101 gc 102  Q
    ||    
T  34562759 gc 34562760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 26 - 216
Target Start/End: Original strand, 34578946 - 34579136
Alignment:
Q  26 ctcttagcatgaatagcacaaagattcgtatcctcaaacaaaccaacaagatacgcttcagcagcttcttgaagtgcagaaacagcactactctgaaatc 125  Q
    |||||||||||||| ||||| | ||| |||||||||||||||||||| | ||| |||||  | ||||| ||||||||   ||| |||   ||||| ||||    
T  34578946 ctcttagcatgaattgcacacaaattggtatcctcaaacaaaccaaccaaataagcttccactgcttcctgaagtgcgagaactgcatggctctggaatc 34579045  T
Q  126 tgagatcagttttgaaatcctgagcgatttcacgaaccaatctttggaatggaagtttcctaatgagaagctcagtgctcttctgatactt 216  Q
    | | ||| || ||||||| |||||| ||||||||||| |  |  |||||||||||||| | ||| | ||| || || | ||||||||||||    
T  34579046 tcaaatctgtcttgaaattctgagcaatttcacgaacaagacgctggaatggaagtttacgaatcaaaagttcggtacccttctgatactt 34579136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 26 - 216
Target Start/End: Original strand, 34584695 - 34584885
Alignment:
Q  26 ctcttagcatgaatagcacaaagattcgtatcctcaaacaaaccaacaagatacgcttcagcagcttcttgaagtgcagaaacagcactactctgaaatc 125  Q
    |||||||||||||| ||||| | ||| |||||||||||||||||||| | ||| |||||  | ||||| ||||||||   ||| |||   ||||| ||||    
T  34584695 ctcttagcatgaattgcacacaaattggtatcctcaaacaaaccaaccaaataagcttccactgcttcctgaagtgcgagaactgcatggctctggaatc 34584794  T
Q  126 tgagatcagttttgaaatcctgagcgatttcacgaaccaatctttggaatggaagtttcctaatgagaagctcagtgctcttctgatactt 216  Q
    | | ||| || ||||||| |||||| ||||||||||| |  |  |||||||||||||| | ||| | ||| || || | ||||||||||||    
T  34584795 tcaaatctgtcttgaaattctgagcaatttcacgaacaagacgctggaatggaagtttacgaatcaaaagttcggtacccttctgatactt 34584885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 146; Significance: 5e-77; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 43479681 - 43479902
Alignment:
Q  1 aatatccttaggcataatggtaactctcttagcatgaatagcacaaagattcgtatcctcaaacaaaccaacaagatacgcttcagcagcttcttgaagt 100  Q
    |||||||||||||||||| ||||| ||||||||||||||||| ||||| || ||||| |||||||||||||||||||| |||||||| |||||||||||     
T  43479681 aatatccttaggcataattgtaaccctcttagcatgaatagcgcaaaggttagtatcttcaaacaaaccaacaagataagcttcagcggcttcttgaaga 43479780  T
Q  101 gcagaaacagcactactctgaaatctgagatcagttttgaaatcctgagcgatttcacgaaccaatctttggaatggaagtttcctaatgagaagctcag 200  Q
    ||||||||||| |||||||| || |||||||||||||||||||||||||||||||| | ||||||||||||||||||||| ||||| ||||||||||| |    
T  43479781 gcagaaacagcgctactctggaacctgagatcagttttgaaatcctgagcgatttccctaaccaatctttggaatggaagcttcctgatgagaagctcgg 43479880  T
Q  201 tgctcttctgatactttcggat 222  Q
    | |||||||||||||| |||||    
T  43479881 tactcttctgatacttgcggat 43479902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 25865821 - 25865600
Alignment:
Q  1 aatatccttaggcataatggtaactctcttagcatgaatagcacaaagattcgtatcctcaaacaaaccaacaagatacgcttcagcagcttcttgaagt 100  Q
    ||||||||| |||||||| || || |||||||||||||| ||||| | ||| |||||||||||||| || |||||||| || ||||||||||| ||||||    
T  25865821 aatatcctttggcataatcgttaccctcttagcatgaattgcacacaaattagtatcctcaaacaatcccacaagataagcctcagcagcttcctgaagt 25865722  T
Q  101 gcagaaacagcactactctgaaatctgagatcagttttgaaatcctgagcgatttcacgaaccaatctttggaatggaagtttcctaatgagaagctcag 200  Q
    |||  |||||||  |||||||||||| ||||| ||||||||||||||||| ||||||||||| |  |  ||||||||||| || |  || | ||||||||    
T  25865721 gcaagaacagcatgactctgaaatctcagatccgttttgaaatcctgagcaatttcacgaacaagacgctggaatggaagcttacggatcaaaagctcag 25865622  T
Q  201 tgctcttctgatactttcggat 222  Q
    | |||||||||||||| |||||    
T  25865621 tactcttctgatacttacggat 25865600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 5 - 222
Target Start/End: Complemental strand, 38799612 - 38799395
Alignment:
Q  5 tccttaggcataatggtaactctcttagcatgaatagcacaaagattcgtatcctcaaacaaaccaacaagatacgcttcagcagcttcttgaagtgcag 104  Q
    ||||||||||| || |||||||||||||||||||| |||||||| || || || ||||| | |||||| |  || |||||||||||||||||||| || |    
T  38799612 tccttaggcatgattgtaactctcttagcatgaattgcacaaaggtttgtgtcttcaaagagaccaaccaagtaagcttcagcagcttcttgaagagcgg 38799513  T
Q  105 aaacagcactactctgaaatctgagatcagttttgaaatcctgagcgatttcacgaaccaatctttggaatggaagtttcctaatgagaagctcagtgct 204  Q
    |||| || || ||||| ||||| ||||| || |||||||| ||||| ||||||||||| |  | ||||||||||||||| |  |||||||||||||||||    
T  38799512 aaactgcgctgctctggaatctcagatctgtcttgaaatcttgagcaatttcacgaacaagacgttggaatggaagtttacggatgagaagctcagtgct 38799413  T
Q  205 cttctgatactttcggat 222  Q
    |||||||||||| |||||    
T  38799412 cttctgatacttacggat 38799395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 5 - 222
Target Start/End: Original strand, 38821905 - 38822122
Alignment:
Q  5 tccttaggcataatggtaactctcttagcatgaatagcacaaagattcgtatcctcaaacaaaccaacaagatacgcttcagcagcttcttgaagtgcag 104  Q
    ||||||||||| || |||||||||||||||||||| |||||||| || || || ||||| | |||||| |  || |||||||||||||||||||| || |    
T  38821905 tccttaggcatgattgtaactctcttagcatgaattgcacaaaggtttgtgtcttcaaagagaccaaccaagtaagcttcagcagcttcttgaagagcgg 38822004  T
Q  105 aaacagcactactctgaaatctgagatcagttttgaaatcctgagcgatttcacgaaccaatctttggaatggaagtttcctaatgagaagctcagtgct 204  Q
    |||| || || ||||| ||||| ||||| || |||||||| ||||| ||||||||||| |  | ||||||||||||||| |  |||||||||||||||||    
T  38822005 aaactgcgctgctctggaatctcagatctgtcttgaaatcttgagcaatttcacgaacaagacgttggaatggaagtttacggatgagaagctcagtgct 38822104  T
Q  205 cttctgatactttcggat 222  Q
    |||||||||||| |||||    
T  38822105 cttctgatacttacggat 38822122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 26592289 - 26592044
Alignment:
Q  1 aatatccttaggcataatggtaactctcttagcatgaatagcacaaagattcgtatcctcaaacaaaccaacaagatacgcttcagcagcttcttgaagt 100  Q
    ||||||||||||||| || ||||| | ||||||||||||||| || || || |||||||||||||| ||||||||||| || || || |||||||| ||     
T  26592289 aatatccttaggcatgatagtaacacgcttagcatgaatagcgcagaggttagtatcctcaaacaatccaacaagataagcctccgccgcttcttgcagc 26592190  T
Q  101 gcagaaacagcactactctgaaatctgagatcagttttgaaatcctgagcgatttcacgaaccaatctttggaatggaagtttcctaatgagaagctcag 200  Q
    || || ||||||   |||||||| | |||||| || |||||||||||||| || |||||||| |  |  ||||| |||||||| | ||||||||| || |    
T  26592189 gccgacacagcagagctctgaaaacggagatccgtcttgaaatcctgagcaatctcacgaacaagacgctggaaaggaagtttgcgaatgagaagttcgg 26592090  T
Q  201 tgctcttctgatactttcggatttcgcgcaatgcgactgttcctgg 246  Q
    |||||||||| ||||| ||||| || || | |||||| ||||||||    
T  26592089 tgctcttctggtacttgcggatctcacggagtgcgacggttcctgg 26592044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 5 - 180
Target Start/End: Complemental strand, 41944061 - 41943886
Alignment:
Q  5 tccttaggcataatggtaactctcttagcatgaatagcacaaagattcgtatcctcaaacaaaccaacaagatacgcttcagcagcttcttgaagtgcag 104  Q
    ||||| |||||||| ||||| |||||||||||||| ||||| | ||| |||||||||||||| ||||| ||||| ||||| || ||||| |||||||||     
T  41944061 tcctttggcataattgtaaccctcttagcatgaattgcacacaaattggtatcctcaaacaatccaaccagataagcttctgctgcttcctgaagtgcaa 41943962  T
Q  105 aaacagcactactctgaaatctgagatcagttttgaaatcctgagcgatttcacgaaccaatctttggaatggaag 180  Q
     |||||||   ||||| ||||||||||| || |||||||| ||||| ||||||||||| |  | ||||||||||||    
T  41943961 gaacagcatggctctggaatctgagatccgtcttgaaatcttgagcaatttcacgaacaagacgttggaatggaag 41943886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 44344076 - 44343977
Alignment:
Q  1 aatatccttaggcataatggtaactctcttagcatgaatagcacaaagattcgtatcctcaaacaaaccaacaagatacgcttcagcagcttcttgaagt 100  Q
    ||||||||| |||||||| || || |||||||||||||||||||| | ||| |||||||||||||| || || ||||| || ||||| ||||| ||||||    
T  44344076 aatatccttgggcataatcgtcaccctcttagcatgaatagcacacaaattggtatcctcaaacaatcccacgagataagcctcagctgcttcctgaagt 44343977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197 (Bit Score: 141; Significance: 5e-74; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 31132 - 30909
Alignment:
Q  1 aatatccttaggcataatggtaactctcttagcatgaatagcacaaagattcgtatcctcaaacaaaccaacaagatacgcttcagcagcttcttgaagt 100  Q
    |||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||     
T  31132 aatatccttaggcataatagtaactctcttagcatgaatagcgcaaagatttgtatcttcaaacaaaccaacaagataagcttcagcagcttcttgaaga 31033  T
Q  101 gcagaaacagcactactctgaaatctgagatcagttttgaaatcctgagcgatttcacgaaccaatctttggaatggaagtttcctaatgagaagctcag 200  Q
    |||||||||||||| ||||| ||||||||||  ||||||||||||||||||||||||||||| |  | ||||||| ||||||| || || ||||||||||    
T  31032 gcagaaacagcactgctctggaatctgagataggttttgaaatcctgagcgatttcacgaacaagacgttggaat-gaagttttcttatcagaagctcag 30934  T
Q  201 tgctcttctgatactttcggatttc 225  Q
    |||||||||| ||||| ||||||||    
T  30933 tgctcttctggtacttgcggatttc 30909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 122; Significance: 1e-62; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 12531613 - 12531392
Alignment:
Q  1 aatatccttaggcataatggtaactctcttagcatgaatagcacaaagattcgtatcctcaaacaaaccaacaagatacgcttcagcagcttcttgaagt 100  Q
    ||||||||||||||| || ||||| |||||||||||||| ||||| ||||| ||||| |||||||||||||||||||| ||||||||||||||||||||     
T  12531613 aatatccttaggcatgatagtaaccctcttagcatgaatggcacagagattagtatcttcaaacaaaccaacaagataagcttcagcagcttcttgaaga 12531514  T
Q  101 gcagaaacagcactactctgaaatctgagatcagttttgaaatcctgagcgatttcacgaaccaatctttggaatggaagtttcctaatgagaagctcag 200  Q
    |||||||||||||| || || |||| |||||| ||||||||||| ||||||||||||||||| |  || ||||||||||| ||||| || |||||||| |    
T  12531513 gcagaaacagcactgctttggaatcggagatctgttttgaaatcttgagcgatttcacgaacaagcctctggaatggaagcttccttataagaagctcgg 12531414  T
Q  201 tgctcttctgatactttcggat 222  Q
    |||||||||| ||||| |||||    
T  12531413 tgctcttctggtacttgcggat 12531392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 12547006 - 12547227
Alignment:
Q  1 aatatccttaggcataatggtaactctcttagcatgaatagcacaaagattcgtatcctcaaacaaaccaacaagatacgcttcagcagcttcttgaagt 100  Q
    ||||||||||||||| || ||||| |||||||||||||| ||||| ||||| ||||| |||||||||||||||||||| ||||||||||||||||||||     
T  12547006 aatatccttaggcatgatagtaaccctcttagcatgaatggcacagagattagtatcttcaaacaaaccaacaagataagcttcagcagcttcttgaaga 12547105  T
Q  101 gcagaaacagcactactctgaaatctgagatcagttttgaaatcctgagcgatttcacgaaccaatctttggaatggaagtttcctaatgagaagctcag 200  Q
    |||||||||||||| || || |||| |||||| ||||||||||| ||||||||||||||||| |  || ||||||||||| ||||| || |||||||| |    
T  12547106 gcagaaacagcactgctttggaatcggagatctgttttgaaatcttgagcgatttcacgaacaagcctctggaatggaagcttccttataagaagctcgg 12547205  T
Q  201 tgctcttctgatactttcggat 222  Q
    |||||||||| ||||| |||||    
T  12547206 tgctcttctggtacttgcggat 12547227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 5 - 146
Target Start/End: Original strand, 9866668 - 9866809
Alignment:
Q  5 tccttaggcataatggtaactctcttagcatgaatagcacaaagattcgtatcctcaaacaaaccaacaagatacgcttcagcagcttcttgaagtgcag 104  Q
    |||| ||||||||| ||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||  ||| ||||||||||||||| ||||    
T  9866668 tcctcaggcataatagtaactctcttagcatgaatagcacaaaggttagtatcttcaaacaaaccaacaagatagtctttagcagcttcttgaagagcag 9866767  T
Q  105 aaacagcactactctgaaatctgagatcagttttgaaatcct 146  Q
    ||||| |||||||||  || || |||||||| ||||||||||    
T  9866768 aaacatcactactctagaacctcagatcagtcttgaaatcct 9866809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 9870102 - 9870004
Alignment:
Q  1 aatatccttaggcataatggtaactctcttagcatgaatagcacaaagattcgtatcctcaaacaaaccaacaagatacgcttcagcagcttcttgaag 99  Q
    |||||||||||||||||| ||||||||||||||||||||||| ||||||||  |||| | |||||||||||||| ||| |||||| |||||||||||||    
T  9870102 aatatccttaggcataatagtaactctcttagcatgaatagcgcaaagattaatatcttaaaacaaaccaacaaaataagcttcaacagcttcttgaag 9870004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 13 - 156
Target Start/End: Complemental strand, 9894752 - 9894610
Alignment:
Q  13 cataatggtaactctcttagcatgaatagcacaaagattcgtatcctcaaacaaaccaacaagatacgcttcagcagcttcttgaagtgcagaaacagca 112  Q
    |||||| ||||||| ||||||||||||||| |||| ||| ||||| |||||||||| ||||| | | |||||| || |||||||||  ||||||||||||    
T  9894752 cataatagtaactcacttagcatgaatagcgcaaatattagtatcttcaaacaaactaacaaaacaagcttcaacaacttcttgaacagcagaaacagca 9894653  T
Q  113 ctactctgaaatctgagatcagttttgaaatcctgagcgatttc 156  Q
    |||||||| || || ||| |||| ||| |||||||||| |||||    
T  9894652 ctactctggaacctcagaccagtcttg-aatcctgagcaatttc 9894610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 14 - 111
Target Start/End: Complemental strand, 38735625 - 38735528
Alignment:
Q  14 ataatggtaactctcttagcatgaatagcacaaagattcgtatcctcaaacaaaccaacaagatacgcttcagcagcttcttgaagtgcagaaacagc 111  Q
    ||||| ||||| |||||||||||||||| |||||| || ||||| ||||||||||||||||||||  |||||    ||| |||||| |||||||||||    
T  38735625 ataattgtaaccctcttagcatgaatagtacaaaggttagtatcttcaaacaaaccaacaagataaacttcaatgactttttgaagagcagaaacagc 38735528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 8 - 45
Target Start/End: Complemental strand, 12538712 - 12538675
Alignment:
Q  8 ttaggcataatggtaactctcttagcatgaatagcaca 45  Q
    |||||||| || ||||||||||||||||||||||||||    
T  12538712 ttaggcatgatagtaactctcttagcatgaatagcaca 12538675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 116; Significance: 4e-59; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 24860667 - 24860440
Alignment:
Q  1 aatatccttaggcataatggtaactctcttagcatgaatagcacaaagattcgtatcctcaaacaaaccaacaagatacgcttcagcagcttcttgaagt 100  Q
    ||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||| ||||| |  ||||| ||||| ||||||||||||||||||||     
T  24860667 aatatccttgggcataatggtaactctcttagcatgaatagcgcaaagatttgtatcttcaaagagtccaacgagataagcttcagcagcttcttgaaga 24860568  T
Q  101 gcagaaacagcactactctgaaatctgagatcagttttgaaatcctgagcgatttcacgaaccaatctttggaatggaagtttcctaatgagaagctcag 200  Q
    ||||||||||| |||||||| || | |||||| ||||||||||| ||||||||||||||||| |  | ||||||||||||||| |  ||||||||||| |    
T  24860567 gcagaaacagcgctactctggaaacggagatcggttttgaaatcttgagcgatttcacgaacgagacgttggaatggaagttttcggatgagaagctctg 24860468  T
Q  201 tgctcttctgatactttcggatttcgcg 228  Q
    |||| || || ||||| |||||||||||    
T  24860467 tgcttttttggtacttgcggatttcgcg 24860440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 2 - 247
Target Start/End: Complemental strand, 34748875 - 34748630
Alignment:
Q  2 atatccttaggcataatggtaactctcttagcatgaatagcacaaagattcgtatcctcaaacaaaccaacaagatacgcttcagcagcttcttgaagtg 101  Q
    |||||||||||||| || || || | ||| |||||||| ||||| || || ||||||||||| | |||||| ||||| || ||||| |||||||| || |    
T  34748875 atatccttaggcatgatagtgacacgcttggcatgaatggcacagaggttagtatcctcaaagagaccaacgagataagcctcagccgcttcttgcagcg 34748776  T
Q  102 cagaaacagcactactctgaaatctgagatcagttttgaaatcctgagcgatttcacgaaccaatctttggaatggaagtttcctaatgagaagctcagt 201  Q
    | || || ||    ||||| || | ||||||||| ||||||||||||||||| ||||||||||  |  ||||| || ||||| |  ||||| || || ||    
T  34748775 ccgacacggcggagctctggaaacggagatcagtcttgaaatcctgagcgatctcacgaaccagacgctggaaggggagtttgcggatgaggagttcggt 34748676  T
Q  202 gctcttctgatactttcggatttcgcgcaatgcgactgttcctggt 247  Q
    ||||||||| ||||| ||||| || || |  ||||| |||||||||    
T  34748675 gctcttctggtacttacggatctcacgtagagcgacggttcctggt 34748630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 26 - 109
Target Start/End: Complemental strand, 53290832 - 53290749
Alignment:
Q  26 ctcttagcatgaatagcacaaagattcgtatcctcaaacaaaccaacaagatacgcttcagcagcttcttgaagtgcagaaaca 109  Q
    |||||||||||||| | |||||| || ||||| |||||||||||||||||||| |||||| |  ||| |||||| |||||||||    
T  53290832 ctcttagcatgaatggtacaaaggttagtatcttcaaacaaaccaacaagataagcttcaacgactttttgaagagcagaaaca 53290749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 122 - 162
Target Start/End: Original strand, 44771097 - 44771137
Alignment:
Q  122 aatctgagatcagttttgaaatcctgagcgatttcacgaac 162  Q
    ||||||||||| |||||||||||||||||||||||||||||    
T  44771097 aatctgagatcggttttgaaatcctgagcgatttcacgaac 44771137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 216
Target Start/End: Complemental strand, 40035909 - 40035830
Alignment:
Q  137 ttgaaatcctgagcgatttcacgaaccaatctttggaatggaagtttcctaatgagaagctcagtgctcttctgatactt 216  Q
    ||||| |||||||| |||||||||||||| || |||||||| || ||||| || |  |||||||| ||||||||||||||    
T  40035909 ttgaagtcctgagcaatttcacgaaccaacctctggaatgggagcttcctgatcaagagctcagtactcttctgatactt 40035830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 96
Target Start/End: Complemental strand, 40036153 - 40036062
Alignment:
Q  5 tccttaggcataatggtaactctcttagcatgaatagcacaaagattcgtatcctcaaacaaaccaacaagatacgcttcagcagcttcttg 96  Q
    ||||| |||||||| ||||||| ||| ||||| |||||||| |  || || |||||||| | |||||||||||| ||||||||||| |||||    
T  40036153 tccttgggcataatagtaactcgcttggcatggatagcacacaagttagtgtcctcaaagagaccaacaagatatgcttcagcagcctcttg 40036062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 65 - 174
Target Start/End: Original strand, 17769233 - 17769342
Alignment:
Q  65 aaaccaacaagatacgcttcagcagcttcttgaagtgcagaaacagcactactctgaaatctgagatcagttttgaaatcctgagcgatttcacgaacca 164  Q
    |||||||||||||| ||| ||   ||||||||||| |||||||||| |||||||| ||||| |||||| |||||||||||||  | |||||| | ||| |    
T  17769233 aaaccaacaagataagctacactggcttcttgaagagcagaaacagtactactctaaaatcggagatctgttttgaaatccttcgtgatttctctaacaa 17769332  T
Q  165 atctttggaa 174  Q
    ||||||||||    
T  17769333 atctttggaa 17769342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 7594138 - 7594240
Alignment:
Q  1 aatatccttaggcataatggtaactctcttagcatgaatagcacaaagattcgtatcctcaaacaaaccaacaagatacgcttcagcagcttcttgaagt 100  Q
    ||||||||| |||||||| || || |||||||||||||| ||||| ||||| || ||||||||||| ||||| || || || ||||| ||||| ||||||    
T  7594138 aatatcctttggcataattgtcaccctcttagcatgaattgcacacagattggtgtcctcaaacaatccaaccaggtaagcctcagctgcttcctgaagt 7594237  T
Q  101 gca 103  Q
    |||    
T  7594238 gca 7594240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 65 - 174
Target Start/End: Original strand, 1539185 - 1539294
Alignment:
Q  65 aaaccaacaagatacgcttcagcagcttcttgaagtgcagaaacagcactactctgaaatctgagatcagttttgaaatcctgagcgatttcacgaacca 164  Q
    |||||||||||||| ||| ||   ||||||||||| | |||||||| |||||||| ||||| |||||| |||||||||| ||  | |||||| | ||| |    
T  1539185 aaaccaacaagataagctacactggcttcttgaagagaagaaacagtactactctaaaatcggagatctgttttgaaatacttcgtgatttctctaacaa 1539284  T
Q  165 atctttggaa 174  Q
    ||||||||||    
T  1539285 atctttggaa 1539294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 65 - 173
Target Start/End: Complemental strand, 27440954 - 27440846
Alignment:
Q  65 aaaccaacaagatacgcttcagcagcttcttgaagtgcagaaacagcactactctgaaatctgagatcagttttgaaatcctgagcgatttcacgaacca 164  Q
    |||||||||||||| ||| ||   ||||||||||| |||||||||   ||||||| ||||| |||||| |||||||||||||  | |||||| | ||| |    
T  27440954 aaaccaacaagataagctacactggcttcttgaagagcagaaacaatgctactctaaaatcggagatctgttttgaaatccttcgtgatttctctaacaa 27440855  T
Q  165 atctttgga 173  Q
    |||||||||    
T  27440854 atctttgga 27440846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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