View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11386A_low_301 (Length: 250)

Name: NF11386A_low_301
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11386A_low_301
NF11386A_low_301
[»] chr1 (2 HSPs)
chr1 (92-245)||(28035968-28036122)
chr1 (5-100)||(28032779-28032874)


Alignment Details
Target: chr1 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 92 - 245
Target Start/End: Original strand, 28035968 - 28036122
Alignment:
Q  92 atttatgagcactatcttaactcaccaaattatttnnnnnnnncatcatagcatggtgcttcgcgtacacattataagcattatcttgattcaccaaaca 191  Q
    ||||||||||||||||||| ||||| |||||||||        ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  28035968 atttatgagcactatcttagctcactaaattatttaaaagaaacatcatagcatggtgcttcacgtacacattataagcattatcttgattcaccaaaca 28036067  T
Q  192 aaac-nnnnnnnncataatgtgatgcttcataaacaaattatgagtattatctag 245  Q
    ||||         |||||||||||||||||||||||||||||||||| |||||||    
T  28036068 aaacaaaaaaaaacataatgtgatgcttcataaacaaattatgagtagtatctag 28036122  T

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Target: chr1; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 5 - 100
Target Start/End: Original strand, 28032779 - 28032874
Alignment:
Q  5 tcgaacacaagagtcaataaaaggagaagaaaccnnnnnnnttaaattcgacttcaatgaaaactcttcacaaataaagtaagaactatttatgag 100  Q
    ||||||||||||||||||||||||||||||||||       ||||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  28032779 tcgaacacaagagtcaataaaaggagaagaaaccaaaaaaattaaattcgacttcaataagaactcttcacaaataaagtaagaactatttatgag 28032874  T

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