View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11386A_low_31 (Length: 436)
Name: NF11386A_low_31
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386A_low_31 |
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Alignment Details
Target: chr2 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 1 - 427
Target Start/End: Complemental strand, 11527344 - 11526916
Alignment:
| Q |
1 |
tacagtgccctggttataatattggtggcgataacaattttctttgccatgannnnnnnaaatttatgtctattactgatatgtcttgtgagactat--t |
98 |
Q |
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| T |
11527344 |
tacagtgccctggttataatattggcggcgataacaattttctttgccatgatttttttaaatttatgtctattaatgatatgtcttgtgagactatatt |
11527245 |
T |
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| Q |
99 |
tttccacttctatccaaatgtggatgaaattctaatagacagaggtagaagaatagctattgacttaaactattaagaaggatttgggtttgctatttta |
198 |
Q |
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| T |
11527244 |
tttccacttctatccaaatgtggatgaaattctaatagacagaggtagaagaatagctattgacttaaactattaagaaggatttgggtttgctatttta |
11527145 |
T |
|
| Q |
199 |
aaagatttatcatcaatcttgatatatgtatgatatgtcataatggtgttgcttaatctctaactaacctcatttagcaatgaaaaattagttgaatata |
298 |
Q |
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| T |
11527144 |
aaagatttatcatcaatcttgatatatgtatgatatgtcataatggtgttgcttaatctctaactaacctcatttagcaatgaaaaattagtagaatata |
11527045 |
T |
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| Q |
299 |
tatttttgttcatgtttacctgtaatatgtagtgatgttttatacatggatttagttgtctaatcctatcaaccaatatgatacaggttttgcaagagca |
398 |
Q |
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| T |
11527044 |
tatttctgttcacgcttacctgtaatatgtagtgatgttttatacatggatttagttgtctaatcctatcagccaatatgatacaggttttgcaagagca |
11526945 |
T |
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| Q |
399 |
agatgaagctgaaattattgctcaacacg |
427 |
Q |
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| T |
11526944 |
agatgaagctgaaattattgctcaacacg |
11526916 |
T |
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