View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11386A_low_314 (Length: 250)
Name: NF11386A_low_314
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386A_low_314 |
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| [»] scaffold0027 (1 HSPs) |
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Alignment Details
Target: scaffold0027 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: scaffold0027
Description:
Target: scaffold0027; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 7 - 226
Target Start/End: Original strand, 45715 - 45930
Alignment:
| Q |
7 |
ctgagatgaacctgattctttgggatcattctggtatagaaaacagtgtttgaacagtaaaaaatctgcatgtgggtgcagtcactatgtaattagcctg |
106 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
45715 |
ctgacatgaacctgattctttgggatcattctggtatagaaaacagtgtttgaacagtaaaaaatttgcatgtgggtgcagtcactatgtaattagcctg |
45814 |
T |
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| Q |
107 |
aaattgagcataggattcctatcacatagaggtactcctacgtactccctcatttttgtagggatgatgctactcggcattccaaatctttgtttctttt |
206 |
Q |
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||||||| |||||||||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
45815 |
aaattgaacataggattcctatcacatagaggtactcc----tactccctaatttttgtagggaagatgctactcggcattccaaatctttgtttctttt |
45910 |
T |
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| Q |
207 |
aataaaaatcctttcatgag |
226 |
Q |
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||||||||| |||||||||| |
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| T |
45911 |
aataaaaattctttcatgag |
45930 |
T |
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