View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11386A_low_328 (Length: 248)
Name: NF11386A_low_328
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386A_low_328 |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 42969382 - 42969613
Alignment:
| Q |
1 |
acttagcattaatcaatttcacattcaaaaaatgttattttgtaactttagtagtagtaatatatttattgaaaattgagctagtaacttaaactaatta |
100 |
Q |
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| T |
42969382 |
acttagcattaatcaatttcacattcaaaaaatgttattttgtaactttagtagtagtaatatatttattgaaaattgagctagtaacttaaactaatta |
42969481 |
T |
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| Q |
101 |
taatttgtacctgtattggagacatatcattctgcatataatccaaaggggtccaagaggcaagtttgtcacaagttttagaccctaaaatacaattctt |
200 |
Q |
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| T |
42969482 |
taatttgtacctgtattggagacatatcattctgcatgtaatccaaaggggtccaagaggcaagtttgtcacaagttttagaccctaaaatacaattctt |
42969581 |
T |
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| Q |
201 |
tatagtattccaataacgaggatcttgtattc |
232 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
42969582 |
tatagtattccaataacgaggatcttgtattc |
42969613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 108 - 215
Target Start/End: Original strand, 10679138 - 10679245
Alignment:
| Q |
108 |
tacctgtattggagacatatcattctgcatataatccaaaggggtccaagaggcaagtttgtcacaagttttagaccctaaaatacaattctttatagta |
207 |
Q |
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| T |
10679138 |
tacctgaattggagacaaatccctttgcatataatcaagagaggtccaagaagcaagttttgaacaagtattagaccccataatacaactcttaatagta |
10679237 |
T |
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| Q |
208 |
ttccaata |
215 |
Q |
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||||||| |
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| T |
10679238 |
ctccaata |
10679245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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