View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11386A_low_330 (Length: 248)

Name: NF11386A_low_330
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11386A_low_330
NF11386A_low_330
[»] chr3 (6 HSPs)
chr3 (1-149)||(11317381-11317529)
chr3 (1-147)||(15461156-15461302)
chr3 (144-235)||(11317554-11317645)
chr3 (5-147)||(11438966-11439108)
chr3 (160-235)||(11439151-11439226)
chr3 (157-235)||(15461038-15461116)
[»] chr8 (7 HSPs)
chr8 (1-149)||(27544290-27544438)
chr8 (1-145)||(27498930-27499074)
chr8 (1-145)||(27504841-27504985)
chr8 (11-147)||(27496683-27496819)
chr8 (144-235)||(27504721-27504812)
chr8 (146-235)||(27544174-27544263)
chr8 (144-235)||(27499103-27499199)
[»] scaffold0071 (2 HSPs)
scaffold0071 (1-147)||(890-1036)
scaffold0071 (157-235)||(1076-1154)


Alignment Details
Target: chr3 (Bit Score: 137; Significance: 1e-71; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 11317381 - 11317529
Alignment:
Q  1 gaatggacaccccaaaaactcagcaagctctttcaagtaaaaattaggtttcattttcatttcttcatatttcaaaaacatcaccttctttggcctttcc 100  Q
    |||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  11317381 gaatggacactccaaaaactcagcaagctctttcaaataaaaattaggtttcattttcatttcttcatatttcaaaaacatcaccttctctggcctttcc 11317480  T
Q  101 aagcttttcttccaatataccaatacatgctcccaaaagggtccaaaag 149  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  11317481 aagcttttcttccaatataccaatacatgctcccaaaagggtccaaaag 11317529  T

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Target: chr3; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 15461302 - 15461156
Alignment:
Q  1 gaatggacaccccaaaaactcagcaagctctttcaagtaaaaattaggtttcattttcatttcttcatatttcaaaaacatcaccttctttggcctttcc 100  Q
    |||||||||||||||||||||||||| ||||||||| ||||||  ||| ||||||||||||||||||||| |||||||||||||||||| | ||||||||    
T  15461302 gaatggacaccccaaaaactcagcaacctctttcaaataaaaacaaggcttcattttcatttcttcatatctcaaaaacatcaccttctcttgcctttcc 15461203  T
Q  101 aagcttttcttccaatataccaatacatgctcccaaaagggtccaaa 147  Q
    |||||||  ||||| ||| | |||| ||| |||||||||||||||||    
T  15461202 aagctttctttccagtatcctaataaatgttcccaaaagggtccaaa 15461156  T

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Target: chr3; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 144 - 235
Target Start/End: Original strand, 11317554 - 11317645
Alignment:
Q  144 caaaagcctcctgtagtggaagtgttcctctactttgtgctctaagcttgtttgtgaaatgccaaagtgaaacaaaattgtctttaggatct 235  Q
    |||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||    
T  11317554 caaaagcctcttgtagtggaagtgttcctctactttgtgctctaaggttgtttgtgaaatgccaaagtgaaacaaaagtgtctttaggatct 11317645  T

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Target: chr3; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 5 - 147
Target Start/End: Original strand, 11438966 - 11439108
Alignment:
Q  5 ggacaccccaaaaactcagcaagctctttcaagtaaaaattaggtttcattttcatttcttcatatttcaaaaacatcaccttctttggcctttccaagc 104  Q
    |||||| ||||||| |||||||||| |||||| | ||||| ||| |||||||||||||||||| || |||||||||| ||||| ||||  |||||||| |    
T  11438966 ggacactccaaaaattcagcaagctttttcaaatgaaaatcaggcttcattttcatttcttcaaatctcaaaaacataaccttgtttgatctttccaaac 11439065  T
Q  105 ttttcttccaatataccaatacatgctcccaaaagggtccaaa 147  Q
    ||| |||||||||  | ||||||||||||||||||||||||||    
T  11439066 tttccttccaataacctaatacatgctcccaaaagggtccaaa 11439108  T

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Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 160 - 235
Target Start/End: Original strand, 11439151 - 11439226
Alignment:
Q  160 tggaagtgttcctctactttgtgctctaagcttgtttgtgaaatgccaaagtgaaacaaaattgtctttaggatct 235  Q
    |||||||||||| |||||||||| ||| | |||||||| ||||||||| |||||| ||||| | ||||||||||||    
T  11439151 tggaagtgttccactactttgtgatcttaccttgtttgagaaatgccatagtgaagcaaaagtatctttaggatct 11439226  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 157 - 235
Target Start/End: Complemental strand, 15461116 - 15461038
Alignment:
Q  157 tagtggaagtgttcctctactttgtgctctaagcttgtttgtgaaatgccaaagtgaaacaaaattgtctttaggatct 235  Q
    |||| |||| ||| ||||| ||||||  |||| |||||||||||||||||| | |||| ||||| ||||||||||||||    
T  15461116 tagttgaagggtttctctattttgtggcctaatcttgtttgtgaaatgccacattgaagcaaaagtgtctttaggatct 15461038  T

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Target: chr8 (Bit Score: 101; Significance: 4e-50; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 27544438 - 27544290
Alignment:
Q  1 gaatggacaccccaaaaactcagcaagctctttcaagtaaaaattaggtttcattttcatttcttcatatttcaaaaacatcaccttctttggcctttcc 100  Q
    ||||||||| |||||||| | ||||| ||||||||| |||||| |||| ||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  27544438 gaatggacaacccaaaaaattagcaatctctttcaaataaaaactaggattcattttcatttcttcatatttcaaaaacatcaccttctccggcctttcc 27544339  T
Q  101 aagcttttcttccaatataccaatacatgctcccaaaagggtccaaaag 149  Q
    ||||||| |||||||||| ||||||||||||||||||| ||||||||||    
T  27544338 aagctttccttccaatatcccaatacatgctcccaaaacggtccaaaag 27544290  T

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Target: chr8; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 27498930 - 27499074
Alignment:
Q  1 gaatggacaccccaaaaactcagcaagctctttcaagtaaaaattaggtttcattttcatttcttcatatttcaaaaacatcaccttctttggcctttcc 100  Q
    ||||||||| |||| ||||||||||| || |||||| |||||| ||||||||||||||||||||||| |||| | |||||||||||||| ||||||||||    
T  27498930 gaatggacaacccagaaactcagcaatctttttcaaataaaaactaggtttcattttcatttcttcaaattttataaacatcaccttctctggcctttcc 27499029  T
Q  101 aagcttttcttccaatataccaatacatgctcccaaaagggtcca 145  Q
    ||| ||| |||||||||| | ||||||||||||||||||||||||    
T  27499030 aagttttccttccaatatcctaatacatgctcccaaaagggtcca 27499074  T

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Target: chr8; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 27504985 - 27504841
Alignment:
Q  1 gaatggacaccccaaaaactcagcaagctctttcaagtaaaaattaggtttcattttcatttcttcatatttcaaaaacatcaccttctttggcctttcc 100  Q
    |||||||||||||||||||| ||||| |||||||||   |||||||||||||||||||||||||||||||||||||||||| |||||||  || ||||||    
T  27504985 gaatggacaccccaaaaacttagcaatctctttcaaaacaaaattaggtttcattttcatttcttcatatttcaaaaacataaccttctccggtctttcc 27504886  T
Q  101 aagcttttcttccaatataccaatacatgctcccaaaagggtcca 145  Q
    ||||||| |||||| ||| | |||||||| |||||||| ||||||    
T  27504885 aagctttccttccagtatcctaatacatgatcccaaaacggtcca 27504841  T

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Target: chr8; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 11 - 147
Target Start/End: Original strand, 27496683 - 27496819
Alignment:
Q  11 cccaaaaactcagcaagctctttcaagtaaaaattaggtttcattttcatttcttcatatttcaaaaacatcaccttctttggcctttccaagcttttct 110  Q
    |||||||||||||||| || |||||| |||||| |||| |||||||||  ||||||||||||||||||||||||||||| |||| ||||||| |||| |     
T  27496683 cccaaaaactcagcaatctttttcaaataaaaactaggcttcattttcgcttcttcatatttcaaaaacatcaccttctctggcatttccaaactttccg 27496782  T
Q  111 tccaatataccaatacatgctcccaaaagggtccaaa 147  Q
    | |||||| | |||||||||||||||||  |||||||    
T  27496783 ttcaatatcctaatacatgctcccaaaacagtccaaa 27496819  T

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Target: chr8; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 144 - 235
Target Start/End: Complemental strand, 27504812 - 27504721
Alignment:
Q  144 caaaagcctcctgtagtggaagtgttcctctactttgtgctctaagcttgtttgtgaaatgccaaagtgaaacaaaattgtctttaggatct 235  Q
    |||||||||| | || |||||||||||||||||||||| |||| |||||||||| |||||||||||||||||||||| ||||||||||||||    
T  27504812 caaaagcctcttctaatggaagtgttcctctactttgttctcttagcttgtttgagaaatgccaaagtgaaacaaaagtgtctttaggatct 27504721  T

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Target: chr8; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 146 - 235
Target Start/End: Complemental strand, 27544263 - 27544174
Alignment:
Q  146 aaagcctcctgtagtggaagtgttcctctactttgtgctctaagcttgtttgtgaaatgccaaagtgaaacaaaattgtctttaggatct 235  Q
    ||||| || |||| |||||||| |||||||||||||||||| ||||||||||||||||||||  | ||||||||| ||||||| ||||||    
T  27544263 aaagcttcttgtaatggaagtggtcctctactttgtgctcttagcttgtttgtgaaatgccagtgcgaaacaaaagtgtcttttggatct 27544174  T

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Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 144 - 235
Target Start/End: Original strand, 27499103 - 27499199
Alignment:
Q  144 caaaagcctcctgtagtggaagtgttcctctactttgtgctctaagcttgtttgtgaaatgcc-----aaagtgaaacaaaattgtctttaggatct 235  Q
    |||||||||| | || |||||||| ||||||||| |||||||| | |||||||||||||||||     |||||||||||||  ||||||||||||||    
T  27499103 caaaagcctcttctaatggaagtggtcctctactctgtgctcttaccttgtttgtgaaatgccaaagtaaagtgaaacaaacatgtctttaggatct 27499199  T

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Target: scaffold0071 (Bit Score: 87; Significance: 8e-42; HSPs: 2)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 890 - 1036
Alignment:
Q  1 gaatggacaccccaaaaactcagcaagctctttcaagtaaaaattaggtttcattttcatttcttcatatttcaaaaacatcaccttctttggcctttcc 100  Q
    |||||||||||||||||||||||||| ||||||||| ||||||  ||| ||||||||||||||||||||| |||||||||||||||||| | ||||||||    
T  890 gaatggacaccccaaaaactcagcaacctctttcaaataaaaacaaggcttcattttcatttcttcatatctcaaaaacatcaccttctcttgcctttcc 989  T
Q  101 aagcttttcttccaatataccaatacatgctcccaaaagggtccaaa 147  Q
    |||||||  ||||| ||| | |||| ||| |||||||||||||||||    
T  990 aagctttctttccagtatcctaataaatgttcccaaaagggtccaaa 1036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 157 - 235
Target Start/End: Original strand, 1076 - 1154
Alignment:
Q  157 tagtggaagtgttcctctactttgtgctctaagcttgtttgtgaaatgccaaagtgaaacaaaattgtctttaggatct 235  Q
    |||| |||| ||| ||||| ||||||  |||| |||||||||||||||||| | |||| ||||| ||||||||||||||    
T  1076 tagttgaagggtttctctattttgtggcctaatcttgtttgtgaaatgccacattgaagcaaaagtgtctttaggatct 1154  T

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