View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11386A_low_333 (Length: 247)

Name: NF11386A_low_333
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11386A_low_333
NF11386A_low_333
[»] chr2 (6 HSPs)
chr2 (1-234)||(34562570-34562803)
chr2 (6-175)||(34571423-34571592)
chr2 (14-174)||(34578892-34579052)
chr2 (14-174)||(34584641-34584801)
chr2 (47-153)||(13576371-13576477)
chr2 (204-234)||(34571313-34571343)
[»] chr8 (8 HSPs)
chr8 (6-175)||(41943926-41944095)
chr8 (20-175)||(25865696-25865851)
chr8 (46-147)||(44343977-44344078)
chr8 (47-153)||(43479673-43479779)
chr8 (53-168)||(26592197-26592312)
chr8 (71-153)||(38807043-38807125)
chr8 (47-153)||(38799518-38799624)
chr8 (47-153)||(38821893-38821999)
[»] chr1 (1 HSPs)
chr1 (20-175)||(7594108-7594263)
[»] chr5 (4 HSPs)
chr5 (47-157)||(12546994-12547104)
chr5 (47-157)||(12531515-12531625)
chr5 (62-145)||(9870019-9870102)
chr5 (74-150)||(9866659-9866735)
[»] scaffold0197 (1 HSPs)
scaffold0197 (18-153)||(31005-31140)
[»] chr7 (3 HSPs)
chr7 (18-153)||(21317568-21317703)
chr7 (47-153)||(3929960-3930066)
chr7 (74-153)||(3928608-3928687)
[»] chr4 (1 HSPs)
chr4 (107-157)||(24860629-24860679)


Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 34562803 - 34562570
Alignment:
1 tgatctcaagccggatttcagattccagagccatgcggttctcgcacttcaggaagcagcggaagcatatttggttggtttgtttgaggataccaatttg 100  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
34562803 tgatctcaagccggatttcagattccagagtcatgcggttctcgcacttcaggaagcagcggaagcatatttggttggtttgtttgaggataccaatttg 34562704  T
101 tgtgcaattcatgctaagagggttaccattatgcctaaggatattcaacttgctcgccgtatccgtggtgaacgtcgtggttaggtttattgactagtta 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||    
34562703 tgtgcaattcatgctaagagggttaccattatgcctaaggatattcaacttgcttgccgtatccgtggtgaacgtcgtggttagggttattgactagtta 34562604  T
201 gtattatgtgttgtattgttctgatttagggttc 234  Q
    ||||||||||||||||||||||||||||||||||    
34562603 gtattatgtgttgtattgttctgatttagggttc 34562570  T

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Target: chr2; HSP #2
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 6 - 175
Target Start/End: Complemental strand, 34571592 - 34571423
Alignment:
6 tcaagccggatttcagattccagagccatgcggttctcgcacttcaggaagcagcggaagcatatttggttggtttgtttgaggataccaatttgtgtgc 105  Q
    ||||| |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
34571592 tcaagacggatttacgattccagagccatgcggttctcgcacttcaggaagcagcggaagcatatttggttggtttgtttgaggataccaatttgtgtgc 34571493  T
106 aattcatgctaagagggttaccattatgcctaaggatattcaacttgctcgccgtatccgtggtgaacgt 175  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
34571492 aattcatgctaagagggttaccattatgcctaaggatattcaacttgctcgccgtatccgtggtgaacgt 34571423  T

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Target: chr2; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 14 - 174
Target Start/End: Complemental strand, 34579052 - 34578892
Alignment:
14 gatttcagattccagagccatgcggttctcgcacttcaggaagcagcggaagcatatttggttggtttgtttgaggataccaatttgtgtgcaattcatg 113  Q
    ||||| ||||||||||||||||| |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||    
34579052 gatttgagattccagagccatgcagttctcgcacttcaggaagcagtggaagcttatttggttggtttgtttgaggataccaatttgtgtgcaattcatg 34578953  T
114 ctaagagggttaccattatgcctaaggatattcaacttgctcgccgtatccgtggtgaacg 174  Q
    |||||||| | ||| |||||   |||||||||||||||||||| |||||||||||||||||    
34578952 ctaagaggatcaccgttatggtgaaggatattcaacttgctcgtcgtatccgtggtgaacg 34578892  T

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Target: chr2; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 14 - 174
Target Start/End: Complemental strand, 34584801 - 34584641
Alignment:
14 gatttcagattccagagccatgcggttctcgcacttcaggaagcagcggaagcatatttggttggtttgtttgaggataccaatttgtgtgcaattcatg 113  Q
    ||||| ||||||||||||||||| |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||    
34584801 gatttgagattccagagccatgcagttctcgcacttcaggaagcagtggaagcttatttggttggtttgtttgaggataccaatttgtgtgcaattcatg 34584702  T
114 ctaagagggttaccattatgcctaaggatattcaacttgctcgccgtatccgtggtgaacg 174  Q
    |||||||| | ||| |||||   |||||||||||||||||||| |||||||||||||||||    
34584701 ctaagaggatcaccgttatggtgaaggatattcaacttgctcgtcgtatccgtggtgaacg 34584641  T

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Target: chr2; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 47 - 153
Target Start/End: Original strand, 13576371 - 13576477
Alignment:
47 cttcaggaagcagcggaagcatatttggttggtttgtttgaggataccaatttgtgtgcaattcatgctaagagggttaccattatgcctaaggatattc 146  Q
    ||||| ||||| || ||||| ||| | |||||||||||||||||||| ||| | ||||| |||||||||||||||||||| |||||||||||||||||||    
13576371 cttcaagaagctgctgaagcttatcttgttggtttgtttgaggatacgaatctttgtgctattcatgctaagagggttactattatgcctaaggatattc 13576470  T
147 aacttgc 153  Q
    |||||||    
13576471 aacttgc 13576477  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 234
Target Start/End: Complemental strand, 34571343 - 34571313
Alignment:
204 ttatgtgttgtattgttctgatttagggttc 234  Q
    |||||||||||||||||||||||||||||||    
34571343 ttatgtgttgtattgttctgatttagggttc 34571313  T

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Target: chr8 (Bit Score: 118; Significance: 3e-60; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 6 - 175
Target Start/End: Original strand, 41943926 - 41944095
Alignment:
6 tcaagccggatttcagattccagagccatgcggttctcgcacttcaggaagcagcggaagcatatttggttggtttgtttgaggataccaatttgtgtgc 105  Q
    ||||| ||||| ||||||||||||||||||| ||||| ||||||||||||||||| ||||| ||| ||||||| ||||||||||||||||||||||||||    
41943926 tcaagacggatctcagattccagagccatgctgttcttgcacttcaggaagcagcagaagcttatctggttggattgtttgaggataccaatttgtgtgc 41944025  T
106 aattcatgctaagagggttaccattatgcctaaggatattcaacttgctcgccgtatccgtggtgaacgt 175  Q
    ||||||||||||||||||||| |||||||| ||||| ||||||||||| |||||||| ||||||||||||    
41944026 aattcatgctaagagggttacaattatgccaaaggacattcaacttgcacgccgtattcgtggtgaacgt 41944095  T

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Target: chr8; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 20 - 175
Target Start/End: Original strand, 25865696 - 25865851
Alignment:
20 agattccagagccatgcggttctcgcacttcaggaagcagcggaagcatatttggttggtttgtttgaggataccaatttgtgtgcaattcatgctaaga 119  Q
    ||||| ||||| ||||| ||||| |||||||||||||| || || || ||| | || || |||||||||||||| |||||||||||||||||||||||||    
25865696 agatttcagagtcatgctgttcttgcacttcaggaagctgctgaggcttatcttgtgggattgtttgaggatactaatttgtgtgcaattcatgctaaga 25865795  T
120 gggttaccattatgcctaaggatattcaacttgctcgccgtatccgtggtgaacgt 175  Q
    |||| || |||||||| ||||||||||| |||||||| ||||| ||||||||||||    
25865796 gggtaacgattatgccaaaggatattcagcttgctcgtcgtattcgtggtgaacgt 25865851  T

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Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 46 - 147
Target Start/End: Original strand, 44343977 - 44344078
Alignment:
46 acttcaggaagcagcggaagcatatttggttggtttgtttgaggataccaatttgtgtgcaattcatgctaagagggttaccattatgcctaaggatatt 145  Q
    ||||||||||||||| || || ||| | || || |||||||||||||||||||||||||| ||||||||||||||||| || |||||||| |||||||||    
44343977 acttcaggaagcagctgaggcttatctcgtgggattgtttgaggataccaatttgtgtgctattcatgctaagagggtgacgattatgcccaaggatatt 44344076  T
146 ca 147  Q
    ||    
44344077 ca 44344078  T

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Target: chr8; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 47 - 153
Target Start/End: Complemental strand, 43479779 - 43479673
Alignment:
47 cttcaggaagcagcggaagcatatttggttggtttgtttgaggataccaatttgtgtgcaattcatgctaagagggttaccattatgcctaaggatattc 146  Q
    ||||| ||||| || ||||| ||| | |||||||||||||| ||||| ||  | || || |||||||||||||||||||| |||||||||||||||||||    
43479779 cttcaagaagccgctgaagcttatcttgttggtttgtttgaagatactaacctttgcgctattcatgctaagagggttacaattatgcctaaggatattc 43479680  T
147 aacttgc 153  Q
    |||||||    
43479679 aacttgc 43479673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 53 - 168
Target Start/End: Original strand, 26592197 - 26592312
Alignment:
53 gaagcagcggaagcatatttggttggtttgtttgaggataccaatttgtgtgcaattcatgctaagagggttaccattatgcctaaggatattcaacttg 152  Q
    ||||| ||||| || ||| | ||||| |||||||||||||| ||  | || || |||||||||||| | ||||| || ||||||||||||||||| ||||    
26592197 gaagcggcggaggcttatcttgttggattgtttgaggatactaacctctgcgctattcatgctaagcgtgttactatcatgcctaaggatattcagcttg 26592296  T
153 ctcgccgtatccgtgg 168  Q
    || | |||||||||||    
26592297 ctaggcgtatccgtgg 26592312  T

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Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 71 - 153
Target Start/End: Original strand, 38807043 - 38807125
Alignment:
71 ttggttggtttgtttgaggataccaatttgtgtgcaattcatgctaagagggttaccattatgcctaaggatattcaacttgc 153  Q
    ||||||||| | |||||||| || |||  ||| ||||||||||||||||| ||||| || ||||||||||| |||||||||||    
38807043 ttggttggtctctttgaggacacaaatccgtgcgcaattcatgctaagagagttactatcatgcctaaggacattcaacttgc 38807125  T

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Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 47 - 153
Target Start/End: Original strand, 38799518 - 38799624
Alignment:
47 cttcaggaagcagcggaagcatatttggttggtttgtttgaggataccaatttgtgtgcaattcatgctaagagggttaccattatgcctaaggatattc 146  Q
    ||||| ||||| || ||||| || ||||||||| | ||||| || || ||  | |||||||||||||||||||| ||||| || ||||||||||| ||||    
38799518 cttcaagaagctgctgaagcttacttggttggtctctttgaagacacaaacctttgtgcaattcatgctaagagagttacaatcatgcctaaggacattc 38799617  T
147 aacttgc 153  Q
    | |||||    
38799618 agcttgc 38799624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 47 - 153
Target Start/End: Complemental strand, 38821999 - 38821893
Alignment:
47 cttcaggaagcagcggaagcatatttggttggtttgtttgaggataccaatttgtgtgcaattcatgctaagagggttaccattatgcctaaggatattc 146  Q
    ||||| ||||| || ||||| || ||||||||| | ||||| || || ||  | |||||||||||||||||||| ||||| || ||||||||||| ||||    
38821999 cttcaagaagctgctgaagcttacttggttggtctctttgaagacacaaacctttgtgcaattcatgctaagagagttacaatcatgcctaaggacattc 38821900  T
147 aacttgc 153  Q
    | |||||    
38821899 agcttgc 38821893  T

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Target: chr1 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 20 - 175
Target Start/End: Complemental strand, 7594263 - 7594108
Alignment:
20 agattccagagccatgcggttctcgcacttcaggaagcagcggaagcatatttggttggtttgtttgaggataccaatttgtgtgcaattcatgctaaga 119  Q
    ||||||||||||||||| ||||| ||||||||||||||||| || || ||  ||||||| ||||||||||| |||||| |||||||||||||||||||||    
7594263 agattccagagccatgcagttcttgcacttcaggaagcagctgaggcttacctggttggattgtttgaggacaccaatctgtgtgcaattcatgctaaga 7594164  T
120 gggttaccattatgcctaaggatattcaacttgctcgccgtatccgtggtgaacgt 175  Q
    |||| || |||||||| ||||||||||| |||||||| || || ||||||||||||    
7594163 gggtgacaattatgccaaaggatattcagcttgctcgtcgcattcgtggtgaacgt 7594108  T

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Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 47 - 157
Target Start/End: Complemental strand, 12547104 - 12546994
Alignment:
47 cttcaggaagcagcggaagcatatttggttggtttgtttgaggataccaatttgtgtgcaattcatgctaagagggttaccattatgcctaaggatattc 146  Q
    ||||| ||||| || ||||| ||| | |||||||||||||| ||||| ||| | ||||| |||||||||||||||||||| || ||||||||||||||||    
12547104 cttcaagaagctgctgaagcttatcttgttggtttgtttgaagatactaatctctgtgccattcatgctaagagggttactatcatgcctaaggatattc 12547005  T
147 aacttgctcgc 157  Q
    |||||||||||    
12547004 aacttgctcgc 12546994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 47 - 157
Target Start/End: Original strand, 12531515 - 12531625
Alignment:
47 cttcaggaagcagcggaagcatatttggttggtttgtttgaggataccaatttgtgtgcaattcatgctaagagggttaccattatgcctaaggatattc 146  Q
    ||||| ||||| || ||||| ||| | |||||||||||||| ||||| ||| | ||||| |||||||||||||||||||| || ||||||||||||||||    
12531515 cttcaagaagctgctgaagcttatcttgttggtttgtttgaagatactaatctctgtgccattcatgctaagagggttactatcatgcctaaggatattc 12531614  T
147 aacttgctcgc 157  Q
    |||| ||||||    
12531615 aactcgctcgc 12531625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 62 - 145
Target Start/End: Original strand, 9870019 - 9870102
Alignment:
62 gaagcatatttggttggtttgtttgaggataccaatttgtgtgcaattcatgctaagagggttaccattatgcctaaggatatt 145  Q
    ||||| ||||| |||||||||||| | ||||  ||| | || || |||||||||||||| ||||| ||||||||||||||||||    
9870019 gaagcttattttgttggtttgttttaagatattaatctttgcgctattcatgctaagagagttactattatgcctaaggatatt 9870102  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 150
Target Start/End: Complemental strand, 9866735 - 9866659
Alignment:
74 gttggtttgtttgaggataccaatttgtgtgcaattcatgctaagagggttaccattatgcctaaggatattcaact 150  Q
    |||||||||||||| ||||| ||  | ||||| |||||||||||||| ||||| ||||||||| |||| || |||||    
9866735 gttggtttgtttgaagatactaacctttgtgctattcatgctaagagagttactattatgcctgaggacatccaact 9866659  T

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Target: scaffold0197 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 18 - 153
Target Start/End: Original strand, 31005 - 31140
Alignment:
18 tcagattccagagccatgcggttctcgcacttcaggaagcagcggaagcatatttggttggtttgtttgaggataccaatttgtgtgcaattcatgctaa 117  Q
    ||||||||||||||  ||| |||   || ||||| ||||| || ||||| ||| | |||||||||||||| ||||| ||| | || || |||||||||||    
31005 tcagattccagagcagtgctgtttctgctcttcaagaagctgctgaagcttatcttgttggtttgtttgaagatacaaatctttgcgctattcatgctaa 31104  T
118 gagggttaccattatgcctaaggatattcaacttgc 153  Q
    ||| ||||| ||||||||||||||||||||||||||    
31105 gagagttactattatgcctaaggatattcaacttgc 31140  T

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Target: chr7 (Bit Score: 52; Significance: 6e-21; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 18 - 153
Target Start/End: Original strand, 21317568 - 21317703
Alignment:
18 tcagattccagagccatgcggttctcgcacttcaggaagcagcggaagcatatttggttggtttgtttgaggataccaatttgtgtgcaattcatgctaa 117  Q
    ||||||||||||||  ||| |||   || ||||| ||||| || ||||| ||| | |||||||||||||| ||||| ||| | || || |||||||||||    
21317568 tcagattccagagcagtgctgtttctgctcttcaagaagcggctgaagcttatcttgttggtttgtttgaagatacaaatctttgcgctattcatgctaa 21317667  T
118 gagggttaccattatgcctaaggatattcaacttgc 153  Q
    ||| ||||| ||||||||||||||||||||||||||    
21317668 gagagttactattatgcctaaggatattcaacttgc 21317703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 47 - 153
Target Start/End: Complemental strand, 3930066 - 3929960
Alignment:
47 cttcaggaagcagcggaagcatatttggttggtttgtttgaggataccaatttgtgtgcaattcatgctaagagggttaccattatgcctaaggatattc 146  Q
    ||||| ||||| || ||||| ||| | |||||||||||||| ||||| ||| | ||||| |||||||||||||| ||||| |||||||| ||||||||||    
3930066 cttcaagaagctgctgaagcgtatcttgttggtttgtttgaagatacgaatctttgtgccattcatgctaagagagttactattatgccgaaggatattc 3929967  T
147 aacttgc 153  Q
    |||||||    
3929966 aacttgc 3929960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 74 - 153
Target Start/End: Complemental strand, 3928687 - 3928608
Alignment:
74 gttggtttgtttgaggataccaatttgtgtgcaattcatgctaagagggttaccattatgcctaaggatattcaacttgc 153  Q
    |||||||||||||| ||||  ||| | ||||| |||||||||||||| ||||| ||| |||||||||||||| |||||||    
3928687 gttggtttgtttgaagatatgaatctttgtgctattcatgctaagagagttactattgtgcctaaggatattaaacttgc 3928608  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 107 - 157
Target Start/End: Original strand, 24860629 - 24860679
Alignment:
107 attcatgctaagagggttaccattatgcctaaggatattcaacttgctcgc 157  Q
    |||||||||||||| |||||||||||||| |||||||||||||| ||||||    
24860629 attcatgctaagagagttaccattatgcccaaggatattcaactcgctcgc 24860679  T

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