View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11386A_low_335 (Length: 247)
Name: NF11386A_low_335
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386A_low_335 |
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Alignment Details
Target: chr4 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 19 - 159
Target Start/End: Original strand, 40659955 - 40660096
Alignment:
| Q |
19 |
acatcaacaaacaacaa-gaagcacatcatggaacatttggcttgcacactactatcaagctgatacccaatccctacatgccctgtaaaccataggctc |
117 |
Q |
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| T |
40659955 |
acatcaacaaacaacaaagaagcacatcatggaacatttggcttgcacactactatcaagctgatacccaattcctacatgccctgtaaaccataggctc |
40660054 |
T |
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| Q |
118 |
caaacaggacaacaaccaagttcaaccttcacaaagcatgac |
159 |
Q |
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| T |
40660055 |
caaacaggacaacaaccaagttcaaccttcacaaagcatgac |
40660096 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 189 - 236
Target Start/End: Original strand, 40660127 - 40660174
Alignment:
| Q |
189 |
tctgcaccactagccacacaccaccttttaaatcctgcagccgtgatg |
236 |
Q |
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| T |
40660127 |
tctgcaccactagccacacaccaccttttaaatcctgcagcagtgatg |
40660174 |
T |
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