View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11386A_low_336 (Length: 246)
Name: NF11386A_low_336
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386A_low_336 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 10 - 246
Target Start/End: Complemental strand, 41223246 - 41223010
Alignment:
| Q |
10 |
aagaatatgattctcagaagaaaatcaaaataggggaagacgataaaggttccatccataacttagcaagaccaccaacaaaagtaagctgggttttgtc |
109 |
Q |
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| T |
41223246 |
aagaaaatgattctcagaagaaaatcaaaataggggaagacgatagaggttccatccataacttagcaagaccaccaacaaaagtgagctgggttttgtc |
41223147 |
T |
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| Q |
110 |
tgatcctagaggcttctggaaccctatactcgatgattctattgtaccggcatcataaaagaggaaatggtcccaagcattttcaatatccattaatgaa |
209 |
Q |
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| T |
41223146 |
tgatcctagaggcttctggaaccctttcctcgatgattctgttgtaccggcatctgaaaagaggaaatggtccgaagcattttcaatatccatcaatgaa |
41223047 |
T |
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| Q |
210 |
ggagcttctagtggagtcaataattgaggtaagcttg |
246 |
Q |
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| T |
41223046 |
ggagctactagtggagttaataattgaggtaagcttg |
41223010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 8 - 246
Target Start/End: Original strand, 16233771 - 16234010
Alignment:
| Q |
8 |
cgaagaatatgattctcagaagaaaatcaaaataggggaagacgataaaggttccatccataacttagcaagaccaccaacaaaagtaagctgggttttg |
107 |
Q |
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| T |
16233771 |
cgaagaaaatgattctcagaagaaaatcaaaataggggaagccgataaagattccatccataacttagcaagactaccaacaaaagtaagctgggttttg |
16233870 |
T |
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| Q |
108 |
tctgatcctagaggcttctggaaccctatactcgatgattctattgtaccggcatc-ataaaagaggaaatggtcccaagcattttcaatatccattaat |
206 |
Q |
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| T |
16233871 |
tctgatcctagaggcttctggaaccctatcctcgatgattctattgtaccggcatctggaaaagaggaaatggtcccaagcattttcaatatccatcaat |
16233970 |
T |
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| Q |
207 |
gaaggagcttctagtggagtcaataattgaggtaagcttg |
246 |
Q |
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| T |
16233971 |
gaaggagctacttgtggagttaataattgaggtaagcttg |
16234010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 18 - 213
Target Start/End: Complemental strand, 41217458 - 41217262
Alignment:
| Q |
18 |
gattctcagaagaaaatcaaaataggggaagacgataaaggttccatccataacttagcaagaccaccaacaaaagtaagctgggttttgtctgatccta |
117 |
Q |
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| T |
41217458 |
gattctcagaagaaaatcaaaacgggggaagacgacggaggttccatccataacttaacaaaaccaccaacaaaagtaagctgggttttgtctggtcctg |
41217359 |
T |
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| Q |
118 |
gaggcttctggaaccctatactcgatgattctattgtaccggcatcataaaagaggaaatggtcccaagca-ttttcaatatccattaatgaaggag |
213 |
Q |
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| T |
41217358 |
gtggcttctggagccctttcctagatgattctattgtaccaacatctgaaaagacgaaatggaacgaaacatttttcaatatccttcaatgaaggag |
41217262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 16 - 209
Target Start/End: Original strand, 1598413 - 1598606
Alignment:
| Q |
16 |
atgattctcagaagaaaatcaaaataggggaagacgataaaggttccatccataacttagcaagaccaccaacaaaagtaagctgggttttgtctgatcc |
115 |
Q |
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| T |
1598413 |
atgattctcagaagaaaatcaaaacgggggaagacgatagaggttccatccataacttaacaaaaccaccaacaaaagtaagctgggttttgtctagtcc |
1598512 |
T |
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| Q |
116 |
tagaggcttctggaaccctatactcgatgattctattgtaccggcatcataaaagaggaaatggtcccaagcattttcaatatccattaatgaa |
209 |
Q |
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| T |
1598513 |
cgagggcttctggaaccctttcctagatgattatattgtaccagcatctgaaaagaggaaatggtccgaagcattttcgatatccatcaatgaa |
1598606 |
T |
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