View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11386A_low_338 (Length: 246)
Name: NF11386A_low_338
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386A_low_338 |
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Alignment Details
Target: chr2 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 15887703 - 15887947
Alignment:
| Q |
1 |
aaatatgaataattttgatgtaccggtttcatagttttttcatcattcacctgaagtttaatgcaacagtttagtgctgactccaattgatgtcgatttg |
100 |
Q |
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| T |
15887703 |
aaatatgaataattttgatgtaccggtttcatagttttttcatcattcacctgaagtttaatgcaacagtttagtgctgactccaattgatgtcgatttg |
15887802 |
T |
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| Q |
101 |
gtcatcttgttttgatgtgctagtttttaagggtgttttacacatggattttatatacca---------------------ttttattttatatcattag |
179 |
Q |
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| T |
15887803 |
gtcatcttgttttgatgtgctagtttttaagggtgttttacacatggttcttatagaccattttattcaacatggccaactttttattttatatcattag |
15887902 |
T |
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| Q |
180 |
aaattgaagttggtatcctagggtttacaatactcacacacctta |
224 |
Q |
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| T |
15887903 |
aaattgaagttggtatcctagggtttacaatactcacacacctta |
15887947 |
T |
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