View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11386A_low_345 (Length: 246)
Name: NF11386A_low_345
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11386A_low_345 |
 | |
|
| [»] scaffold0428 (1 HSPs) |
| | |
|
| [»] scaffold1749 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 227; Significance: 1e-125; HSPs: 13)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 33059433 - 33059671
Alignment:
| Q |
1 |
tttgtatcaaagtagttgcattgtaacgattgcatatttggtggtgttctatgccgagagtttgaaataggatttgtttttgtacatcgagtggagcatc |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
33059433 |
tttgtatcaaagtagttgcatggtaacgattgcatatttgttggtgttctatgccgagagtttgaaataggatttgtttttgtacatcgagtggatcatc |
33059532 |
T |
|
| Q |
101 |
atgtaatccataaattttggttacatcgtcaataaaacaagatgcactaaattgatgagatatttggccatataaagtcgtagcaagggttgttttccct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33059533 |
atgtaatccataaattttggttacatcgtcaataaaacaagatgcactaaattgatgagatatttggccatataaagtcgtagcaagggttgttttccct |
33059632 |
T |
|
| Q |
201 |
attcctcccattccacaaattcctatagcacgaacacca |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33059633 |
attcctcccattccacaaattcctatagcacgaacacca |
33059671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 4 - 239
Target Start/End: Complemental strand, 33642809 - 33642574
Alignment:
| Q |
4 |
gtatcaaagtagttgcattgtaacgattgcatatttggtggtgttctatgccgagagtttgaaataggatttgtttttgtacatcgagtggagcatcatg |
103 |
Q |
| |
|
|||||||| |||||| ||| ||||||||||||||| |||||||||||||| |||||||||||||||||||| |||||| | ||||||||| ||||||| |
|
|
| T |
33642809 |
gtatcaaatcagttgccatgttacgattgcatatttgatggtgttctatgccaagagtttgaaataggatttgcttttgtgcttcgagtggaccatcatg |
33642710 |
T |
|
| Q |
104 |
taatccataaattttggttacatcgtcaataaaacaagatgcactaaattgatgagatatttggccatataaagtcgtagcaagggttgttttccctatt |
203 |
Q |
| |
|
||||| |||||||||| ||||||| ||||||||||| |||||||||||| |||||||||||||| ||||||||| ||||||||||||||| ||||||||| |
|
|
| T |
33642709 |
taatctataaattttgcttacatcatcaataaaacatgatgcactaaatcgatgagatatttggtcatataaagccgtagcaagggttgtcttccctatt |
33642610 |
T |
|
| Q |
204 |
cctcccattccacaaattcctatagcacgaacacca |
239 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
33642609 |
cctcccattccacaaattcctatagcacgaacacca |
33642574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 33359949 - 33360187
Alignment:
| Q |
1 |
tttgtatcaaagtagttgcattgtaacgattgcatatttggtggtgttctatgccgagagtttgaaataggatttgtttttgtacatcgagtggagcatc |
100 |
Q |
| |
|
||||||||||||||||||||| ||||| || |||||||| | ||||||||||| |||||||||||||||||||| |||||| ||||||||||| ||| |
|
|
| T |
33359949 |
tttgtatcaaagtagttgcatggtaacaatcgcatattttattgtgttctatgctgagagtttgaaataggattttcttttgtgcatcgagtggattatc |
33360048 |
T |
|
| Q |
101 |
atgtaatccataaattttggttacatcgtcaataaaacaagatgcactaaattgatgagatatttggccatataaagtcgtagcaagggttgttttccct |
200 |
Q |
| |
|
||||| || |||||||| |||||||| ||||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33360049 |
atgtagtctgtaaattttagttacatcatcaataaaaaaagatgcactaaattggtgagagatttggccatataaagtcgtagcaagggttgttttccca |
33360148 |
T |
|
| Q |
201 |
attcctcccattccacaaattcctatagcacgaacacca |
239 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
33360149 |
attcctccaattccacaaattcctatagcacgaacacca |
33360187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 4 - 239
Target Start/End: Original strand, 33411826 - 33412061
Alignment:
| Q |
4 |
gtatcaaagtagttgcattgtaacgattgcatatttggtggtgttctatgccgagagtttgaaataggatttgtttttgtacatcgagtggagcatcatg |
103 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||||||| |||||||||||||||| |||||||| ||||||||| ||||| ||||||| ||| |||||| |
|
|
| T |
33411826 |
gtatcaaatcagttgcactgtaacgattgcatatttgatggtgttctatgccgacagtttgaagtaggatttgcctttgtgcatcgaggggaccatcata |
33411925 |
T |
|
| Q |
104 |
taatccataaattttggttacatcgtcaataaaacaagatgcactaaattgatgagatatttggccatataaagtcgtagcaagggttgttttccctatt |
203 |
Q |
| |
|
||||| |||||||||| |||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| || |||||| |
|
|
| T |
33411926 |
taatctataaattttgcttacatcgtctataaaacaagatgcactaaattgatgagatatctggccatataaagtcatagcaagggttgtctttcctatt |
33412025 |
T |
|
| Q |
204 |
cctcccattccacaaattcctatagcacgaacacca |
239 |
Q |
| |
|
|| ||||||||||||||||| ||||||| ||||||| |
|
|
| T |
33412026 |
ccgcccattccacaaattccaatagcacaaacacca |
33412061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 4 - 237
Target Start/End: Original strand, 33273665 - 33273898
Alignment:
| Q |
4 |
gtatcaaagtagttgcattgtaacgattgcatatttggtggtgttctatgccgagagtttgaaataggatttgtttttgtacatcgagtggagcatcatg |
103 |
Q |
| |
|
|||||||| ||||| | ||||| ||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||| ||||||| ||| ||||||| |
|
|
| T |
33273665 |
gtatcaaattagttacgctgtaatgattgcatatttgatggtgttctatgccgagagtttgaagtaggatttgcttttgtgcatcgaggggaccatcatg |
33273764 |
T |
|
| Q |
104 |
taatccataaattttggttacatcgtcaataaaacaagatgcactaaattgatgagatatttggccatataaagtcgtagcaagggttgttttccctatt |
203 |
Q |
| |
|
|||| |||||||||| ||||||| || |||||||| |||||||||||| ||||||||||||| ||||||||| | ||||||||||||| ||||||||| |
|
|
| T |
33273765 |
taatttataaattttgcttacatcatctataaaacaggatgcactaaatcgatgagatatttgatcatataaagccatagcaagggttgtcttccctatt |
33273864 |
T |
|
| Q |
204 |
cctcccattccacaaattcctatagcacgaacac |
237 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
33273865 |
cctcccattccacaaattcctatagcacgaacac |
33273898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 4 - 237
Target Start/End: Original strand, 33306359 - 33306592
Alignment:
| Q |
4 |
gtatcaaagtagttgcattgtaacgattgcatatttggtggtgttctatgccgagagtttgaaataggatttgtttttgtacatcgagtggagcatcatg |
103 |
Q |
| |
|
|||||||| |||||| ||||||||||||| |||| | |||||||||||||| |||||||||||||||||||| |||||| ||| ||||||| ||||||| |
|
|
| T |
33306359 |
gtatcaaatcagttgcgttgtaacgattgcttattagatggtgttctatgcctagagtttgaaataggatttgcttttgtgcattgagtggaccatcatg |
33306458 |
T |
|
| Q |
104 |
taatccataaattttggttacatcgtcaataaaacaagatgcactaaattgatgagatatttggccatataaagtcgtagcaagggttgttttccctatt |
203 |
Q |
| |
|
||| | |||||||||||||||||| |||||| | || |||||||||||| |||||||||||||| ||||||||| | ||||||||||||| ||||||||| |
|
|
| T |
33306459 |
taaactataaattttggttacatcatcaatatagcaggatgcactaaatcgatgagatatttggtcatataaagccatagcaagggttgtcttccctatt |
33306558 |
T |
|
| Q |
204 |
cctcccattccacaaattcctatagcacgaacac |
237 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||||| |
|
|
| T |
33306559 |
cctcccattccagaaattcctatagcacaaacac |
33306592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 2 - 239
Target Start/End: Original strand, 33402485 - 33402722
Alignment:
| Q |
2 |
ttgtatcaaagtagttgcattgtaacgattgcatatttggtggtgttctatgccgagagtttgaaataggatttgtttttgtacatcgagtggagcatca |
101 |
Q |
| |
|
|||||||||| | ||||| ||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |||||| |||| | ||| ||||| |
|
|
| T |
33402485 |
ttgtatcaaatcaattgcactgtaacgattgcatatttgatggtgttctatgccgagagtttgatgtaggatttgcttttgtgcatcaattgggccatca |
33402584 |
T |
|
| Q |
102 |
tgtaatccataaattttggttacatcgtcaataaaacaagatgcactaaattgatgagatatttggccatataaagtcgtagcaagggttgttttcccta |
201 |
Q |
| |
|
| ||||| |||||||||| ||||||| ||||| ||||| |||||||||||| ||||||| ||||||||||||||| || ||||||||||||| ||||||| |
|
|
| T |
33402585 |
tataatctataaattttgcttacatcatcaatgaaacaggatgcactaaatcgatgagagatttggccatataaattcatagcaagggttgtcttcccta |
33402684 |
T |
|
| Q |
202 |
ttcctcccattccacaaattcctatagcacgaacacca |
239 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
33402685 |
ttcctcccattccacaaattcttatagcacgaacacca |
33402722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 6 - 239
Target Start/End: Complemental strand, 31561014 - 31560781
Alignment:
| Q |
6 |
atcaaagtagttgcattgtaacgattgcatatttggtggtgttctatgccgagagtttgaaataggatttgtttttgtacatcgagtggagcatcatgta |
105 |
Q |
| |
|
|||||| ||||||| ||||| ||||||||||||| | |||||||||||||| |||||||| ||||||||| |||||| ||||||| ||| ||||| | |
|
|
| T |
31561014 |
atcaaattagttgcgctgtaatgattgcatatttgattgtgttctatgccgacagtttgaagtaggatttgcttttgtgcatcgaggggaccatcacctg |
31560915 |
T |
|
| Q |
106 |
atccataaattttggttacatcgtcaataaaacaagatgcactaaattgatgagatatttggccatataaagtcgtagcaagggttgttttccctattcc |
205 |
Q |
| |
|
||| |||||||||| ||||||| ||||||||||| |||||||||||| ||||||||||||||||||| |||||| ||||||||| ||| ||||||||||| |
|
|
| T |
31560914 |
atctataaattttgcttacatcatcaataaaacaggatgcactaaatcgatgagatatttggccatacaaagtcatagcaagggctgtcttccctattcc |
31560815 |
T |
|
| Q |
206 |
tcccattccacaaattcctatagcacgaacacca |
239 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| |
|
|
| T |
31560814 |
tcccattccacaaattcctataacacgaacacca |
31560781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 4 - 239
Target Start/End: Complemental strand, 31567335 - 31567100
Alignment:
| Q |
4 |
gtatcaaagtagttgcattgtaacgattgcatatttggtggtgttctatgccgagagtttgaaataggatttgtttttgtacatcgagtggagcatcatg |
103 |
Q |
| |
|
|||||||| |||| || ||||| ||||||||||||| ||||| |||||||| | |||||||| ||||||||| |||||| ||||||| ||| |||||| |
|
|
| T |
31567335 |
gtatcaaattagtggcgctgtaatgattgcatatttgttggtgatctatgccaacagtttgaagtaggatttgcttttgtgcatcgaggggaccatcata |
31567236 |
T |
|
| Q |
104 |
taatccataaattttggttacatcgtcaataaaacaagatgcactaaattgatgagatatttggccatataaagtcgtagcaagggttgttttccctatt |
203 |
Q |
| |
|
| ||| |||||||||| ||||||| |||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||| ||||||||| |
|
|
| T |
31567235 |
tgatctataaattttgcttacatcatcaatataacaagatgcactaaatcgatgagatatttggccatataaagtctcagcaagggctgtcttccctatt |
31567136 |
T |
|
| Q |
204 |
cctcccattccacaaattcctatagcacgaacacca |
239 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||| |
|
|
| T |
31567135 |
ccccccattccacaaattcctatagcacgaacacca |
31567100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 4 - 239
Target Start/End: Original strand, 33389945 - 33390180
Alignment:
| Q |
4 |
gtatcaaagtagttgcattgtaacgattgcatatttggtggtgttctatgccgagagtttgaaataggatttgtttttgtacatcgagtggagcatcatg |
103 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||||||| ||||||| |||| |||||||||||||||| ||||| |||||| |||| | ||| ||||| |
|
|
| T |
33389945 |
gtatcaaatcagttgcaatgtaacgattgcatatttgatggtgttttatgtcgagagtttgaaatagaatttgcttttgtgcatccaaaggaccatcaca |
33390044 |
T |
|
| Q |
104 |
taatccataaattttggttacatcgtcaataaaacaagatgcactaaattgatgagatatttggccatataaagtcgtagcaagggttgttttccctatt |
203 |
Q |
| |
|
||||| ||| |||||| ||||||| |||||||||||| |||||||||| |||||||||||||| ||||||||||| | ||||||||||| ||||||||| |
|
|
| T |
33390045 |
taatctatatattttgcttacatcatcaataaaacaatttgcactaaatcgatgagatatttggtcatataaagtcatggcaagggttgtcttccctatt |
33390144 |
T |
|
| Q |
204 |
cctcccattccacaaattcctatagcacgaacacca |
239 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| |
|
|
| T |
33390145 |
cctcccattccacaaattcctatagcatgaacacca |
33390180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 5 - 239
Target Start/End: Original strand, 9168648 - 9168882
Alignment:
| Q |
5 |
tatcaaagtagttgcattgtaacgattgcatatttggtggtgttctatgccgagagtttgaaataggatttgtttttgtacatcgagtggagcatcatgt |
104 |
Q |
| |
|
||||||| | || ||| |||| |||||||||||||| ||||||||||||||||||||||||| || |||||| |||||| |||||||||| ||||||| |
|
|
| T |
9168648 |
tatcaaatttgtggcactgtagcgattgcatatttgatggtgttctatgccgagagtttgaagtaagatttgcttttgtgcatcgagtgggccatcatgc |
9168747 |
T |
|
| Q |
105 |
aatccataaattttggttacatcgtcaataaaacaagatgcactaaattgatgagatatttggccatataaagtcgtagcaagggttgttttccctattc |
204 |
Q |
| |
|
|||| ||||||||| ||| ||| ||||||||||| |||||||||||| |||||||||||||| |||||||| | | ||||| ||||| |||||||||| |
|
|
| T |
9168748 |
aatctataaattttacttatatcatcaataaaacaggatgcactaaatcgatgagatatttggtcatataaaaccattgcaagagttgtcttccctattc |
9168847 |
T |
|
| Q |
205 |
ctcccattccacaaattcctatagcacgaacacca |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
9168848 |
ctcccattccacaaattcctatagcacgaacacca |
9168882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 5 - 239
Target Start/End: Original strand, 33264523 - 33264757
Alignment:
| Q |
5 |
tatcaaagtagttgcattgtaacgattgcatatttggtggtgttctatgccgagagtttgaaataggatttgtttttgtacatcgagtggagcatcatgt |
104 |
Q |
| |
|
||||||| ||||||| | ||| ||||||||||||| |||||||||||||| ||||||||| ||||||||| |||||| |||| | |||| |||||||| |
|
|
| T |
33264523 |
tatcaaatcagttgcactataatgattgcatatttgatggtgttctatgccaagagtttgatgtaggatttgcttttgtgcatctattggaccatcatgt |
33264622 |
T |
|
| Q |
105 |
aatccataaattttggttacatcgtcaataaaacaagatgcactaaattgatgagatatttggccatataaagtcgtagcaagggttgttttccctattc |
204 |
Q |
| |
|
|||| | |||||||| ||||||| ||||| ||||| |||||| |||| ||||| | ||||||||||||||| || ||||||||||||| |||||||||| |
|
|
| T |
33264623 |
aatctaaaaattttgcttacatcatcaatgaaacaggatgcatcaaatcgatgacagatttggccatataaattcatagcaagggttgtcttccctattc |
33264722 |
T |
|
| Q |
205 |
ctcccattccacaaattcctatagcacgaacacca |
239 |
Q |
| |
|
||||||| || |||||||||||||||||||||||| |
|
|
| T |
33264723 |
ctcccatcccccaaattcctatagcacgaacacca |
33264757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 33287412 - 33287646
Alignment:
| Q |
1 |
tttgtatcaaagtagttgcattgtaacgattgcatatttggtggtgttctatgccgagagtttgaaataggatttgtttttgtacatcgagtggagcatc |
100 |
Q |
| |
|
||||||||||| |||||||| || |||||||||||| || |||| |||||| |||| ||||||| |||||||| |||||| ||||||| ||| |||| |
|
|
| T |
33287412 |
tttgtatcaaattagttgcacggtgacgattgcatatatgatggtcttctattccgacggtttgaagtaggatttccttttgtgcatcgaggggaccatc |
33287511 |
T |
|
| Q |
101 |
atgtaatccataaattttggttacatcgtcaataaaacaagatgcactaaattgatgagatatttggccatataaagtcgtagcaagggttgttttccct |
200 |
Q |
| |
|
|||||||| | | |||||| ||||| ||||||||||||||| |||||||| |||| |||||||| ||||||||| | ||| |||||||||||||||| |
|
|
| T |
33287512 |
atgtaatctaaattttttggcaacatcttcaataaaacaagatccactaaatcgatgggatatttgatcatataaagccatagaaagggttgttttccct |
33287611 |
T |
|
| Q |
201 |
attcctcccattccacaaattcctatagcacgaac |
235 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |
|
|
| T |
33287612 |
attcctcccattccacaaattcctattgcacgaac |
33287646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 129; Significance: 7e-67; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 15 - 239
Target Start/End: Complemental strand, 17439024 - 17438800
Alignment:
| Q |
15 |
gttgcattgtaacgattgcatatttggtggtgttctatgccgagagtttgaaataggatttgtttttgtacatcgagtggagcatcatgtaatccataaa |
114 |
Q |
| |
|
|||||| ||||||||||||||||||| |||||||||||||| ||||||||||||| |||||| |||||| | || |||||| |||||||||||| ||||| |
|
|
| T |
17439024 |
gttgcactgtaacgattgcatatttgatggtgttctatgccaagagtttgaaatatgatttgcttttgtgcttcaagtggaccatcatgtaatctataaa |
17438925 |
T |
|
| Q |
115 |
ttttggttacatcgtcaataaaacaagatgcactaaattgatgagatatttggccatataaagtcgtagcaagggttgttttccctattcctcccattcc |
214 |
Q |
| |
|
||||| ||||||| ||||| |||||||||||| |||| ||||||| ||||||||||||||| | |||||||||||| ||||||||||||||||| || |
|
|
| T |
17438924 |
ttttgcttacatcatcaatgaaacaagatgcatcaaatcgatgagagatttggccatataaatccaaagcaagggttgtcttccctattcctcccatccc |
17438825 |
T |
|
| Q |
215 |
acaaattcctatagcacgaacacca |
239 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
17438824 |
ccaaattcctatagcacgaacacca |
17438800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 5 - 239
Target Start/End: Original strand, 8634 - 8868
Alignment:
| Q |
5 |
tatcaaagtagttgcattgtaacgattgcatatttggtggtgttctatgccgagagtttgaaataggatttgtttttgtacatcgagtggagcatcatgt |
104 |
Q |
| |
|
||||||| ||||||| | ||| ||||||||||||| |||||||||||||| ||||||||| ||||||||| |||||| |||| | |||| |||||||| |
|
|
| T |
8634 |
tatcaaatcagttgcactataatgattgcatatttgatggtgttctatgccaagagtttgatgtaggatttgcttttgtgcatcaattggaccatcatgt |
8733 |
T |
|
| Q |
105 |
aatccataaattttggttacatcgtcaataaaacaagatgcactaaattgatgagatatttggccatataaagtcgtagcaagggttgttttccctattc |
204 |
Q |
| |
|
|||| | |||||||| ||||||| ||||| ||||| |||||| |||| ||||| | ||||||||||||||| || ||||||||||||| |||||||||| |
|
|
| T |
8734 |
aatctaaaaattttgcttacatcatcaatgaaacaggatgcatcaaatcgatgacagatttggccatataaattcatagcaagggttgtcttccctattc |
8833 |
T |
|
| Q |
205 |
ctcccattccacaaattcctatagcacgaacacca |
239 |
Q |
| |
|
||||||| || |||||||||||| ||||||||||| |
|
|
| T |
8834 |
ctcccatcccccaaattcctataacacgaacacca |
8868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 56 - 226
Target Start/End: Complemental strand, 31497082 - 31496912
Alignment:
| Q |
56 |
gagagtttgaaataggatttgtttttgtacatcgagtggagcatcatgtaatccataaattttggttacatcgtcaataaaacaagatgcactaaattga |
155 |
Q |
| |
|
|||||||||| ||| ||||| ||||| |||| |||||| |||||||||||| | |||||||| ||||||| ||||||||||| ||||| ||||||| |
|
|
| T |
31497082 |
gagagtttgatgtagaatttgcttttgaacattgagtggtccatcatgtaatctaaaaattttgcttacatcatcaataaaacatcatgcatcaaattga |
31496983 |
T |
|
| Q |
156 |
tgagatatttggccatataaagtcgtagcaagggttgttttccctattcctcccattccacaaattcctat |
226 |
Q |
| |
|
| ||| |||| |||| |||| ||||||||||| || ||||||||||||||||| |||||||||||||| |
|
|
| T |
31496982 |
ttagagattttagcatacaaagcagtagcaagggtagtcttccctattcctcccatcccacaaattcctat |
31496912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 54 - 225
Target Start/End: Complemental strand, 31477131 - 31476960
Alignment:
| Q |
54 |
ccgagagtttgaaataggatttgtttttgtacatcgagtggagcatcatgtaatccataaattttggttacatcgtcaataaaacaagatgcactaaatt |
153 |
Q |
| |
|
|||||||||||| ||| ||||| ||||| ||||||||||| |||||||||||| | | |||||| ||||||| ||||||||||| |||||| ||||| |
|
|
| T |
31477131 |
ccgagagtttgatgtagaatttgcttttgaacatcgagtggcccatcatgtaatctaaacattttgcttacatcatcaataaaacagcatgcaccaaatt |
31477032 |
T |
|
| Q |
154 |
gatgagatatttggccatataaagtcgtagcaagggttgttttccctattcctcccattccacaaattccta |
225 |
Q |
| |
|
||||||| ||| |||||| | | | |||||||||| ||||||||||| ||||| ||||||||||||| |
|
|
| T |
31477031 |
gatgagaaattctatcatatagaaccatgccaagggttgtcttccctattccacccatcccacaaattccta |
31476960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 28 - 225
Target Start/End: Complemental strand, 31502279 - 31502082
Alignment:
| Q |
28 |
gattgcatatttggtggtgttctatgccgagagtttgaaataggatttgtttttgtacatcgagtggagcatcatgtaatccataaattttggttacatc |
127 |
Q |
| |
|
||||||||||||| | ||||||| ||| | |||||| |||| ||||| ||||| ||| | ||||| |||||||||||| | | |||||| ||||||| |
|
|
| T |
31502279 |
gattgcatatttgattgtgttcttcaccgtgtgtttgatatagtatttgcttttgaacaccaagtggtccatcatgtaatctaaacattttgcttacatc |
31502180 |
T |
|
| Q |
128 |
gtcaataaaacaagatgcactaaattgatgagatatttggccatataaagtcgtagcaagggttgttttccctattcctcccattccacaaattccta |
225 |
Q |
| |
|
|| ||||||||| |||||| |||||||||||| ||| |||||| | | || |||||||||| ||||||||||| ||||| ||||| ||||||| |
|
|
| T |
31502179 |
atcgataaaacaacatgcaccaaattgatgagaaattctatcatatagaaccctaccaagggttgtcttccctattccacccatcccacagattccta |
31502082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 114 - 225
Target Start/End: Original strand, 31019771 - 31019882
Alignment:
| Q |
114 |
attttggttacatcgtcaataaaacaagatgcactaaattgatgagatatttggccatataaagtcgtagcaagggttgttttccctattcctcccattc |
213 |
Q |
| |
|
|||||| ||| ||| |||||||||||| |||| |||||||||||| ||||| |||||||||| ||||| || ||||| ||||||||||| ||||| | |
|
|
| T |
31019771 |
attttgcttagatcatcaataaaacaacgtgcatcaaattgatgagagatttgaccatataaagcagtagccagagttgtcttccctattccacccatcc |
31019870 |
T |
|
| Q |
214 |
cacaaattccta |
225 |
Q |
| |
|
|||||||||||| |
|
|
| T |
31019871 |
cacaaattccta |
31019882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 114 - 225
Target Start/End: Complemental strand, 31489775 - 31489664
Alignment:
| Q |
114 |
attttggttacatcgtcaataaaacaagatgcactaaattgatgagatatttggccatataaagtcgtagcaagggttgttttccctattcctcccattc |
213 |
Q |
| |
|
|||||| ||| ||| |||||||||||| |||| |||||||||||| ||||| |||||||||| ||||| || ||||| ||||||||||| ||||| | |
|
|
| T |
31489775 |
attttgcttagatcatcaataaaacaacgtgcatcaaattgatgagagatttgaccatataaagcagtagccagagttgtcttccctattccacccatcc |
31489676 |
T |
|
| Q |
214 |
cacaaattccta |
225 |
Q |
| |
|
|||||||||||| |
|
|
| T |
31489675 |
cacaaattccta |
31489664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 114 - 225
Target Start/End: Original strand, 31029652 - 31029763
Alignment:
| Q |
114 |
attttggttacatcgtcaataaaacaagatgcactaaattgatgagatatttggccatataaagtcgtagcaagggttgttttccctattcctcccattc |
213 |
Q |
| |
|
|||||| ||| ||| |||||||||||| |||| |||||||||||| ||||| |||||||||| |||| || ||||| ||||||||||| ||||| | |
|
|
| T |
31029652 |
attttgcttagatcatcaataaaacaacgtgcatcaaattgatgagagatttgaccatataaagcagtagtcagagttgtcttccctattccacccatcc |
31029751 |
T |
|
| Q |
214 |
cacaaattccta |
225 |
Q |
| |
|
|||||||||||| |
|
|
| T |
31029752 |
cacaaattccta |
31029763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 225
Target Start/End: Original strand, 31150385 - 31150430
Alignment:
| Q |
180 |
gtagcaagggttgttttccctattcctcccattccacaaattccta |
225 |
Q |
| |
|
|||||||||||||| ||||||| ||| ||||| ||||||||||||| |
|
|
| T |
31150385 |
gtagcaagggttgtcttccctactccacccatcccacaaattccta |
31150430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1749 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: scaffold1749
Description:
Target: scaffold1749; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 135 - 239
Target Start/End: Original strand, 3 - 107
Alignment:
| Q |
135 |
aaacaagatgcactaaattgatgagatatttggccatataaagtcgtagcaagggttgttttccctattcctcccattccacaaattcctatagcacgaa |
234 |
Q |
| |
|
||||| |||||| |||| ||||| | ||||||||||||||| || ||||||||||||| ||||||||||||||||| || |||||||||||| |||||| |
|
|
| T |
3 |
aaacaggatgcatcaaatcgatgacagatttggccatataaattcatagcaagggttgtcttccctattcctcccatcccccaaattcctataacacgaa |
102 |
T |
|
| Q |
235 |
cacca |
239 |
Q |
| |
|
||||| |
|
|
| T |
103 |
cacca |
107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University