View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11386A_low_349 (Length: 245)

Name: NF11386A_low_349
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11386A_low_349
NF11386A_low_349
[»] chr2 (4 HSPs)
chr2 (15-232)||(26062861-26063078)
chr2 (15-232)||(26068600-26068817)
chr2 (164-232)||(13135606-13135674)
chr2 (73-149)||(29829913-29829989)
[»] chr1 (4 HSPs)
chr1 (50-186)||(40583034-40583169)
chr1 (1-161)||(27292287-27292447)
chr1 (65-161)||(45110925-45111021)
chr1 (35-101)||(32839206-32839272)
[»] chr7 (2 HSPs)
chr7 (1-129)||(8904788-8904914)
chr7 (51-102)||(32868696-32868747)
[»] chr5 (3 HSPs)
chr5 (35-101)||(15195963-15196029)
chr5 (1-91)||(1954302-1954392)
chr5 (76-161)||(28076796-28076881)
[»] chr8 (1 HSPs)
chr8 (65-230)||(10261107-10261270)
[»] chr3 (1 HSPs)
chr3 (47-97)||(28690232-28690282)
[»] chr6 (1 HSPs)
chr6 (77-150)||(1445914-1445987)
[»] chr4 (1 HSPs)
chr4 (1-161)||(9734111-9734271)
[»] scaffold0527 (2 HSPs)
scaffold0527 (175-227)||(3216-3268)
scaffold0527 (175-227)||(11279-11331)


Alignment Details
Target: chr2 (Bit Score: 186; Significance: 1e-101; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 15 - 232
Target Start/End: Original strand, 26062861 - 26063078
Alignment:
Q  15 aaaacgcagagtgagcattcagagcatctacataagcgtatgaatcggcggccaacatataaacgatccaagttccaacaactcccttctagatgaagca 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  26062861 aaaacgcagagtgagcattcagagcatctacataagcgtatgaatcgtctgccaacacataaacgatccaagttccaacaactcccttctagatgaagca 26062960  T
Q  115 agttaaacgccctttcaagccaaaccaactaattactaaccgaagcatggagtcgcacaagtcttgaaacttcagtcatagtccagatcgtgggatgaac 214  Q
    ||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||    
T  26062961 agttaaacgtcctctcaagccaaaccaactaattacgaaccgaagcatggagtcgcacaagttttgaaacttcagtcgtagtccagatcgtgggatgaac 26063060  T
Q  215 aaacgacaaaaattcatc 232  Q
    ||||||||||||||||||    
T  26063061 aaacgacaaaaattcatc 26063078  T

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Target: chr2; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 15 - 232
Target Start/End: Original strand, 26068600 - 26068817
Alignment:
Q  15 aaaacgcagagtgagcattcagagcatctacataagcgtatgaatcggcggccaacatataaacgatccaagttccaacaactcccttctagatgaagca 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  26068600 aaaacgcagagtgagcattcagagcatctacataagcgtatgaatcgtctgccaacacataaacgatccaagttccaacaactcccttctagatgaagca 26068699  T
Q  115 agttaaacgccctttcaagccaaaccaactaattactaaccgaagcatggagtcgcacaagtcttgaaacttcagtcatagtccagatcgtgggatgaac 214  Q
    ||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||    
T  26068700 agttaaacgtcctctcaagccaaaccaactaattacgaaccgaagcatggagtcgcacaagttttgaaacttcagtcgtagtccagatcgtgggatgaac 26068799  T
Q  215 aaacgacaaaaattcatc 232  Q
    ||||||||||||||||||    
T  26068800 aaacgacaaaaattcatc 26068817  T

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Target: chr2; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 164 - 232
Target Start/End: Original strand, 13135606 - 13135674
Alignment:
Q  164 gagtcgcacaagtcttgaaacttcagtcatagtccagatcgtgggatgaacaaacgacaaaaattcatc 232  Q
    |||||||| |||||||||||||||| || ||||||| |||| |||||||||||||||| ||||||||||    
T  13135606 gagtcgcataagtcttgaaacttcaatcgtagtccaaatcgagggatgaacaaacgactaaaattcatc 13135674  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 149
Target Start/End: Complemental strand, 29829989 - 29829913
Alignment:
Q  73 ataaacgatccaagttccaacaactcccttctagatgaagcaagttaaacgccctttcaagccaaaccaactaatta 149  Q
    |||||||| || |||||||||||||||||| |  | |||||||| |||| ||||||||  || |||||||| |||||    
T  29829989 ataaacgaccctagttccaacaactcccttttgaaagaagcaagctaaaagccctttcgggctaaaccaaccaatta 29829913  T

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Target: chr1 (Bit Score: 69; Significance: 4e-31; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 50 - 186
Target Start/End: Original strand, 40583034 - 40583169
Alignment:
Q  50 gcgtatgaatcggcggccaacatataaacgatccaagttccaacaactcccttctagatgaagcaagttaaacgccctttcaagccaaaccaactaatta 149  Q
    |||||||||||| | ||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |||| |||||||| || || ||||| |  ||    
T  40583034 gcgtatgaatcgtctgccaacatagaaacgatccaagttcca-caactcccttctagatgaagcaagtaaaacaccctttcaggctaatccaaccagata 40583132  T
Q  150 ctaaccgaagcatggagtcgcacaagtcttgaaactt 186  Q
    | ||||||||||||||||||||   ||||||||||||    
T  40583133 cgaaccgaagcatggagtcgcatcggtcttgaaactt 40583169  T

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Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 27292287 - 27292447
Alignment:
Q  1 aaccaaattgcaagaaaacgcagagtgagcattcagagcatctacataagcgtatgaatcggcggccaacatataaacgatccaagttccaacaactccc 100  Q
    |||| |||||||| |||||| |||||||||||||| ||| | || |  | |||||| |||| | ||||||| | |||||| ||||| ||||||||| |||    
T  27292287 aaccgaattgcaaaaaaacgtagagtgagcattcaaagcttataaaaga-cgtatggatcgactgccaacacagaaacgacccaagatccaacaaccccc 27292385  T
Q  101 ttct-agatgaagcaagttaaacgccctttcaagccaaaccaactaattactaaccgaagca 161  Q
    || | | |||||||||| |||| |||||||||||| |||||||| |||||| ||||||||||    
T  27292386 ttttgaaatgaagcaagctaaaagccctttcaagctaaaccaaccaattacgaaccgaagca 27292447  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 161
Target Start/End: Original strand, 45110925 - 45111021
Alignment:
Q  65 gccaacatataaacgatccaagttccaacaactcccttctagatgaagcaagttaaacgccctttcaagccaaaccaactaattactaaccgaagca 161  Q
    ||||||||| ||| || |||||||||||| ||||||||||  | |||||||| |||| || |||||| || |||||||| | |||| |||| |||||    
T  45110925 gccaacatagaaatgacccaagttccaactactcccttctgaacgaagcaagctaaaagctctttcaggctaaaccaaccatttacgaaccaaagca 45111021  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 101
Target Start/End: Original strand, 32839206 - 32839272
Alignment:
Q  35 agagcatctacataagcgtatgaatcggcggccaacatataaacgatccaagttccaacaactccct 101  Q
    |||||||||| ||| |||||||||||  |  || ||| | |||||||||||||||||||||||||||    
T  32839206 agagcatctagataggcgtatgaatcatctacctacacagaaacgatccaagttccaacaactccct 32839272  T

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Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 8904788 - 8904914
Alignment:
Q  1 aaccaaattgcaagaaaacgcagagtgagcattcagagcatctacataagcgtatgaatcggcggccaacatataaacgatccaagttccaacaactccc 100  Q
    ||||||||||||| |||||||| |||| |||||||||| ||  |  || |||||||||| | | | ||||| ||||||||||||||||||| ||||| ||    
T  8904788 aaccaaattgcaaaaaaacgcaaagtgggcattcagagtattgag-taggcgtatgaattgtctgtcaacacataaacgatccaagttcca-caacttcc 8904885  T
Q  101 ttctagatgaagcaagttaaacgcccttt 129  Q
    ||||||||||||||||| |||||||||||    
T  8904886 ttctagatgaagcaagtaaaacgcccttt 8904914  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 51 - 102
Target Start/End: Original strand, 32868696 - 32868747
Alignment:
Q  51 cgtatgaatcggcggccaacatataaacgatccaagttccaacaactccctt 102  Q
    ||||||| ||| | |||||||||||| |||||||||||||||||||||||||    
T  32868696 cgtatgactcgtctgccaacatataatcgatccaagttccaacaactccctt 32868747  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 35 - 101
Target Start/End: Complemental strand, 15196029 - 15195963
Alignment:
Q  35 agagcatctacataagcgtatgaatcggcggccaacatataaacgatccaagttccaacaactccct 101  Q
    |||||||||| ||| |||||||||||||| ||||||| | ||||||| |||||||||||||||||||    
T  15196029 agagcatctagataggcgtatgaatcggctgccaacacagaaacgattcaagttccaacaactccct 15195963  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 1954392 - 1954302
Alignment:
Q  1 aaccaaattgcaagaaaacgcagagtgagcattcagagcatctacataagcgtatgaatcggcggccaacatataaacgatccaagttcca 91  Q
    |||| ||||||||||||| | |||||||| ||||||||| |||| ||| ||||||| |||| | ||||||| | |||||| ||||| ||||    
T  1954392 aaccgaattgcaagaaaatgtagagtgagtattcagagcttctaaataggcgtatggatcgactgccaacacaaaaacgacccaagatcca 1954302  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 76 - 161
Target Start/End: Original strand, 28076796 - 28076881
Alignment:
Q  76 aacgatccaagttccaacaactcccttctagatgaagcaagttaaacgccctttcaagccaaaccaactaattactaaccgaagca 161  Q
    ||||| ||||||||||||| |||||||||  | ||||||||  ||| ||||||||  || |||||||| | |||| ||||||||||    
T  28076796 aacgacccaagttccaacagctcccttctgaacgaagcaagccaaaagccctttcgggctaaaccaaccatttacgaaccgaagca 28076881  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 65 - 230
Target Start/End: Original strand, 10261107 - 10261270
Alignment:
Q  65 gccaacatataaacgatccaagttccaacaactcccttctagatgaagcaagttaaacgccctttcaagccaaaccaactaattactaaccgaagcatgg 164  Q
    ||||||| | |||||||||||||||| |||| |||| |||| |||||||| || ||||||| ||||| ||||| | ||| |  ||| |||||||||  ||    
T  10261107 gccaacacagaaacgatccaagttcc-acaaatcccatctaaatgaagcaggtaaaacgccttttcaggccaatctaaccatatacgaaccgaagcccgg 10261205  T
Q  165 agtcgcacaagtcttgaaacttcagtcatagtccagatcgtgggatgaacaaacgacaaaaattca 230  Q
    |||||||   ||| | |||||||||   ||||||||| || |||||||||| ||||| ||||||||    
T  10261206 agtcgcatcggtcatcaaacttcagctgtagtccaga-cgagggatgaacagacgacgaaaattca 10261270  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 47 - 97
Target Start/End: Complemental strand, 28690282 - 28690232
Alignment:
Q  47 taagcgtatgaatcggcggccaacatataaacgatccaagttccaacaact 97  Q
    ||||||||||||||| | ||||||| |||||||||||||| ||||||||||    
T  28690282 taagcgtatgaatcgcctgccaacacataaacgatccaaggtccaacaact 28690232  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 77 - 150
Target Start/End: Complemental strand, 1445987 - 1445914
Alignment:
Q  77 acgatccaagttccaacaactcccttctagatgaagcaagttaaacgccctttcaagccaaaccaactaattac 150  Q
    ||||||||||||| ||||| |||||||||| ||||| ||  |||| ||||||||| ||||||| ||| ||||||    
T  1445987 acgatccaagttcgaacaattcccttctaggtgaagaaaactaaatgccctttcatgccaaactaaccaattac 1445914  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 9734271 - 9734111
Alignment:
Q  1 aaccaaattgcaagaaaacgcagagtgagcattcagagcatctacataagcgtatgaatcggcggccaacatataaacgatccaagttccaacaactccc 100  Q
    |||| |||||||| |||||| |||||||||||||| ||| | || | | ||||||| |||| | ||||||| | |||||| ||||| ||||||||| |||    
T  9734271 aaccgaattgcaaaaaaacgtagagtgagcattcaaagcttata-aaaggcgtatggatcgactgccaacacagaaacgacccaagatccaacaaccccc 9734173  T
Q  101 ttct-agatgaagcaagttaaacgccctttcaagccaaaccaactaattactaaccgaagca 161  Q
    |||| | | ||| |||| |||| ||||||||| || || | ||| |||||  ||||||||||    
T  9734172 ttctgaaacgaaccaagctaaaagccctttcaggctaatctaaccaattatgaaccgaagca 9734111  T

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Target: scaffold0527 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0527
Description:

Target: scaffold0527; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 227
Target Start/End: Original strand, 3216 - 3268
Alignment:
Q  175 gtcttgaaacttcagtcatagtccagatcgtgggatgaacaaacgacaaaaat 227  Q
    |||||||||||||||||  ||||||||||  ||||||||||||||||| ||||    
T  3216 gtcttgaaacttcagtcgcagtccagatcaagggatgaacaaacgacataaat 3268  T

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Target: scaffold0527; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 227
Target Start/End: Original strand, 11279 - 11331
Alignment:
Q  175 gtcttgaaacttcagtcatagtccagatcgtgggatgaacaaacgacaaaaat 227  Q
    |||||||||||||||||  ||||||||||  ||||||||||||||||| ||||    
T  11279 gtcttgaaacttcagtcgcagtccagatcaagggatgaacaaacgacataaat 11331  T

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