View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11386A_low_350 (Length: 245)

Name: NF11386A_low_350
Description: NF11386A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11386A_low_350
NF11386A_low_350
[»] chr8 (3 HSPs)
chr8 (22-235)||(16686336-16686549)
chr8 (33-99)||(20863923-20863989)
chr8 (26-85)||(1674226-1674285)
[»] chr6 (27 HSPs)
chr6 (22-175)||(4570881-4571035)
chr6 (26-161)||(4606964-4607099)
chr6 (22-99)||(4557111-4557188)
chr6 (22-172)||(4585547-4585699)
chr6 (22-96)||(4560495-4560569)
chr6 (22-85)||(4480693-4480756)
chr6 (24-88)||(4563708-4563772)
chr6 (22-88)||(4574305-4574371)
chr6 (25-82)||(3171744-3171801)
chr6 (22-99)||(4579418-4579495)
chr6 (22-85)||(4492955-4493018)
chr6 (22-85)||(4505857-4505920)
chr6 (29-90)||(4598166-4598227)
chr6 (25-79)||(4504469-4504523)
chr6 (22-82)||(4267235-4267295)
chr6 (26-82)||(4299813-4299869)
chr6 (22-81)||(4392095-4392154)
chr6 (22-89)||(4592227-4592294)
chr6 (26-85)||(4601789-4601848)
chr6 (26-85)||(4617022-4617081)
chr6 (34-85)||(4515202-4515253)
chr6 (26-85)||(4516321-4516380)
chr6 (23-82)||(4622145-4622204)
chr6 (26-79)||(4490428-4490481)
chr6 (29-90)||(4613794-4613855)
chr6 (187-235)||(4556557-4556605)
chr6 (22-62)||(4568076-4568116)
[»] chr5 (2 HSPs)
chr5 (26-85)||(28000172-28000231)
chr5 (24-82)||(24103002-24103060)
[»] scaffold0477 (1 HSPs)
scaffold0477 (24-82)||(4757-4815)
[»] chr7 (1 HSPs)
chr7 (26-79)||(3086426-3086479)
[»] scaffold0288 (1 HSPs)
scaffold0288 (26-82)||(3792-3848)
[»] chr3 (1 HSPs)
chr3 (26-85)||(1281114-1281173)


Alignment Details
Target: chr8 (Bit Score: 161; Significance: 6e-86; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 22 - 235
Target Start/End: Original strand, 16686336 - 16686549
Alignment:
Q  22 acctggtggttgttcatacatgaacttggagaaagtgattatggaggttttgcttaaacaaaatcaaacctaagtgacnnnnnnnatgcaatgcagtatt 121  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||| |    
T  16686336 acctggtggttgttcatacatgaacttggaaaaagtgattatggaggttttgcttaaacaaaatcaaacctaagtgactttttttatgcaatgcagtagt 16686435  T
Q  122 atattgacccattgatcttctccaattgaattcaagggatatgctattgtagtgttttcactgttcgacacacattgatatttgacacctaaatgacccc 221  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |||||||| || |||||||||||||||||||||||    
T  16686436 atattgatccattgatcttctccaattgaattcaagggatatgctattgtagtattttcagtgtccgacacacgttaatatttgacacctaaatgacccc 16686535  T
Q  222 gacatatttagtta 235  Q
    ||||||||||||||    
T  16686536 gacatatttagtta 16686549  T

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Target: chr8; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 33 - 99
Target Start/End: Original strand, 20863923 - 20863989
Alignment:
Q  33 gttcatacatgaacttggagaaagtgattatggaggttttgcttaaacaaaatcaaacctaagtgac 99  Q
    ||||||| ||||||||||| |||||||||| |||||| |||||||||||||||||||| ||||||||    
T  20863923 gttcatatatgaacttggacaaagtgattaaggaggtgttgcttaaacaaaatcaaacttaagtgac 20863989  T

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Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 26 - 85
Target Start/End: Complemental strand, 1674285 - 1674226
Alignment:
Q  26 ggtggttgttcatacatgaacttggagaaagtgattatggaggttttgcttaaacaaaat 85  Q
    |||||||||||||||||||||||||| |||||||||| ||| || |||||||||||||||    
T  1674285 ggtggttgttcatacatgaacttggacaaagtgattaaggaagtgttgcttaaacaaaat 1674226  T

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Target: chr6 (Bit Score: 86; Significance: 3e-41; HSPs: 27)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 22 - 175
Target Start/End: Complemental strand, 4571035 - 4570881
Alignment:
Q  22 acctggtggttgttcatacatgaacttggagaaagtgattatggaggttttgcttaaacaaaatcaaacctaagtgacnnnnnnnatgcaatgcagtatt 121  Q
    |||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| ||||||| |||||||||||       |||||||| ||||||    
T  4571035 acctggtggttgttcatacatgaacttggaaaaagtgattaaggaggttttgcttaaataaaatcacacctaagtgacgtttttaatgcaatgtagtatt 4570936  T
Q  122 atattgacccattgatcttctccaattgaattcaagggat-atgctattgtagtg 175  Q
    ||||||| ||||||||||||| | |||||||| ||||||| | ||||||||||||    
T  4570935 atattgatccattgatcttctgctattgaatttaagggatgaggctattgtagtg 4570881  T

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Target: chr6; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 26 - 161
Target Start/End: Original strand, 4606964 - 4607099
Alignment:
Q  26 ggtggttgttcatacatgaacttggagaaagtgattatggaggttttgcttaaacaaaatcaaacctaagtgacnnnnnnnatgcaatgcagtattatat 125  Q
    ||||||| |||||||||||||||||| |||||||||| | ||||||||||||||||||||||||||||||||||       |||||||| | |||||| |    
T  4606964 ggtggtttttcatacatgaacttggaaaaagtgattaagaaggttttgcttaaacaaaatcaaacctaagtgactttttttatgcaatgtattattatgt 4607063  T
Q  126 tgacccattgatcttctccaattgaattcaagggat 161  Q
    ||| ||||||||||| ||| |||||||| |||||||    
T  4607064 tgatccattgatcttttcctattgaatttaagggat 4607099  T

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Target: chr6; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 22 - 99
Target Start/End: Complemental strand, 4557188 - 4557111
Alignment:
Q  22 acctggtggttgttcatacatgaacttggagaaagtgattatggaggttttgcttaaacaaaatcaaacctaagtgac 99  Q
    |||||||||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||    
T  4557188 acctggtggttgttcatacatgaatttggaaaaagtgattaaggaggttttgcttaaacaaaatcaaacctaagtgac 4557111  T

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Target: chr6; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 22 - 172
Target Start/End: Complemental strand, 4585699 - 4585547
Alignment:
Q  22 acctggtggttgttcatacatgaacttggagaaagtgattatggaggttttgcttaaacaaaatcaaacc--taagtgacnnnnnnnatgcaatgcagta 119  Q
    |||||| |||||||||||||| |||||||| |||||||||| |||||||||||||||| |||||||||||  |||||||        |||||||| ||||    
T  4585699 acctggaggttgttcatacataaacttggaaaaagtgattaaggaggttttgcttaaataaaatcaaacctataagtga-attttttatgcaatgtagta 4585601  T
Q  120 ttatattgacccattgatcttctccaattgaattcaagggat-atgctattgta 172  Q
    ||||||||| |||||||| |||||| | |||||| ||||||| |||||||||||    
T  4585600 ttatattgatccattgatattctcctactgaatttaagggatgatgctattgta 4585547  T

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Target: chr6; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 22 - 96
Target Start/End: Complemental strand, 4560569 - 4560495
Alignment:
Q  22 acctggtggttgttcatacatgaacttggagaaagtgattatggaggttttgcttaaacaaaatcaaacctaagt 96  Q
    |||||| |||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |||||    
T  4560569 acctggaggttgttcatacatgaacttggagaaagtgattaaggaggtgttgcttaaacaaaatcaaacataagt 4560495  T

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Target: chr6; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 22 - 85
Target Start/End: Complemental strand, 4480756 - 4480693
Alignment:
Q  22 acctggtggttgttcatacatgaacttggagaaagtgattatggaggttttgcttaaacaaaat 85  Q
    |||||||||||||||||||||||||||||| |||||||||| |||||| |||||||||||||||    
T  4480756 acctggtggttgttcatacatgaacttggacaaagtgattaaggaggtcttgcttaaacaaaat 4480693  T

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Target: chr6; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 24 - 88
Target Start/End: Complemental strand, 4563772 - 4563708
Alignment:
Q  24 ctggtggttgttcatacatgaacttggagaaagtgattatggaggttttgcttaaacaaaatcaa 88  Q
    |||| ||||||||||||||||||||||| |||||||| | |||||||||||||||||||||||||    
T  4563772 ctggaggttgttcatacatgaacttggacaaagtgatcaaggaggttttgcttaaacaaaatcaa 4563708  T

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Target: chr6; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 22 - 88
Target Start/End: Complemental strand, 4574371 - 4574305
Alignment:
Q  22 acctggtggttgttcatacatgaacttggagaaagtgattatggaggttttgcttaaacaaaatcaa 88  Q
    |||||| |||||||||||||  ||||||||||||||||||| |||||| ||||||||||||||||||    
T  4574371 acctggaggttgttcatacacaaacttggagaaagtgattaaggaggtgttgcttaaacaaaatcaa 4574305  T

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Target: chr6; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 25 - 82
Target Start/End: Complemental strand, 3171801 - 3171744
Alignment:
Q  25 tggtggttgttcatacatgaacttggagaaagtgattatggaggttttgcttaaacaa 82  Q
    ||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||    
T  3171801 tggtggttgttcatacatgaacttggataaagtgattaaggaggtcttgcttaaacaa 3171744  T

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Target: chr6; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 22 - 99
Target Start/End: Complemental strand, 4579495 - 4579418
Alignment:
Q  22 acctggtggttgttcatacatgaacttggagaaagtgattatggaggttttgcttaaacaaaatcaaacctaagtgac 99  Q
    |||||| || ||||||||||||||||||||||||||||||| |||||| || || |||||||||| ||| ||||||||    
T  4579495 acctggaggctgttcatacatgaacttggagaaagtgattaaggaggtgttactcaaacaaaatcgaacttaagtgac 4579418  T

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Target: chr6; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 22 - 85
Target Start/End: Complemental strand, 4493018 - 4492955
Alignment:
Q  22 acctggtggttgttcatacatgaacttggagaaagtgattatggaggttttgcttaaacaaaat 85  Q
    |||||||||||||||||||||||||||||| |||||||| | ||| || |||||||||||||||    
T  4493018 acctggtggttgttcatacatgaacttggacaaagtgatcaaggatgtcttgcttaaacaaaat 4492955  T

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Target: chr6; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 22 - 85
Target Start/End: Complemental strand, 4505920 - 4505857
Alignment:
Q  22 acctggtggttgttcatacatgaacttggagaaagtgattatggaggttttgcttaaacaaaat 85  Q
    ||||||||||||||||| |||||||||||| ||||| |||| |||||| |||||||||||||||    
T  4505920 acctggtggttgttcattcatgaacttggacaaagttattaaggaggtgttgcttaaacaaaat 4505857  T

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Target: chr6; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 29 - 90
Target Start/End: Complemental strand, 4598227 - 4598166
Alignment:
Q  29 ggttgttcatacatgaacttggagaaagtgattatggaggttttgcttaaacaaaatcaaac 90  Q
    |||||||||||||||||||| ||||||||||||| |||||| || |||||||| ||||||||    
T  4598227 ggttgttcatacatgaacttagagaaagtgattaaggaggtgtttcttaaacagaatcaaac 4598166  T

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Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 25 - 79
Target Start/End: Original strand, 4504469 - 4504523
Alignment:
Q  25 tggtggttgttcatacatgaacttggagaaagtgattatggaggttttgcttaaa 79  Q
    ||||||||||||||||||||||||||| |||||||||| ||| || |||||||||    
T  4504469 tggtggttgttcatacatgaacttggacaaagtgattaaggacgtcttgcttaaa 4504523  T

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Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 22 - 82
Target Start/End: Original strand, 4267235 - 4267295
Alignment:
Q  22 acctggtggttgttcatacatgaacttggagaaagtgattatggaggttttgcttaaacaa 82  Q
    ||||||||||| |||||||||||||||||| ||||| |||| ||||||  |||||||||||    
T  4267235 acctggtggtttttcatacatgaacttggacaaagttattaaggaggtcatgcttaaacaa 4267295  T

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Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 26 - 82
Target Start/End: Original strand, 4299813 - 4299869
Alignment:
Q  26 ggtggttgttcatacatgaacttggagaaagtgattatggaggttttgcttaaacaa 82  Q
    ||||||||||| |||||||||||||| ||||| |||| ||||||| |||||||||||    
T  4299813 ggtggttgttcgtacatgaacttggacaaagttattaaggaggttctgcttaaacaa 4299869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 81
Target Start/End: Original strand, 4392095 - 4392154
Alignment:
Q  22 acctggtggttgttcatacatgaacttggagaaagtgattatggaggttttgcttaaaca 81  Q
    ||||||||||| ||||| |||||||||||| ||| |||||| |||||| |||||||||||    
T  4392095 acctggtggttcttcattcatgaacttggacaaactgattaaggaggtcttgcttaaaca 4392154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 89
Target Start/End: Complemental strand, 4592294 - 4592227
Alignment:
Q  22 acctggtggttgttcatacatgaacttggagaaagtgattatggaggttttgcttaaacaaaatcaaa 89  Q
    |||||| ||||||||||| ||||||||||| ||| |||| | |||||| ||||||||| |||||||||    
T  4592294 acctggaggttgttcatatatgaacttggacaaattgatcaaggaggtgttgcttaaataaaatcaaa 4592227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 85
Target Start/End: Complemental strand, 4601848 - 4601789
Alignment:
Q  26 ggtggttgttcatacatgaacttggagaaagtgattatggaggttttgcttaaacaaaat 85  Q
    |||||||||||||||| |||| |||| ||||| |||| |||||| |||||||||||||||    
T  4601848 ggtggttgttcatacaagaacctggacaaagttattaaggaggtgttgcttaaacaaaat 4601789  T

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Target: chr6; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 85
Target Start/End: Complemental strand, 4617081 - 4617022
Alignment:
Q  26 ggtggttgttcatacatgaacttggagaaagtgattatggaggttttgcttaaacaaaat 85  Q
    |||||||||||||||||||||||| | ||||| |||| ||| || |||||||||||||||    
T  4617081 ggtggttgttcatacatgaacttgaacaaagttattaaggatgtgttgcttaaacaaaat 4617022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 85
Target Start/End: Original strand, 4515202 - 4515253
Alignment:
Q  34 ttcatacatgaacttggagaaagtgattatggaggttttgcttaaacaaaat 85  Q
    ||||||| |||||||||| |||||||| | |||||| |||||||||||||||    
T  4515202 ttcatacttgaacttggacaaagtgatcaaggaggtgttgcttaaacaaaat 4515253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 85
Target Start/End: Complemental strand, 4516380 - 4516321
Alignment:
Q  26 ggtggttgttcatacatgaacttggagaaagtgattatggaggttttgcttaaacaaaat 85  Q
    ||||||||||||||  |||||||||| |||||||||| ||||||  |||| |||||||||    
T  4516380 ggtggttgttcatatgtgaacttggaaaaagtgattaaggaggtgctgctcaaacaaaat 4516321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 82
Target Start/End: Complemental strand, 4622204 - 4622145
Alignment:
Q  23 cctggtggttgttcatacatgaacttggagaaagtgattatggaggttttgcttaaacaa 82  Q
    |||||||||||||||||||  |||||||| ||||| |||| ||||||  |||||||||||    
T  4622204 cctggtggttgttcatacaacaacttggacaaagttattaaggaggtcatgcttaaacaa 4622145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 79
Target Start/End: Original strand, 4490428 - 4490481
Alignment:
Q  26 ggtggttgttcatacatgaacttggagaaagtgattatggaggttttgcttaaa 79  Q
    |||||| ||||||||||||||||||| |||||||||| ||| ||  ||||||||    
T  4490428 ggtggtagttcatacatgaacttggacaaagtgattaaggatgtcatgcttaaa 4490481  T

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Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 90
Target Start/End: Original strand, 4613794 - 4613855
Alignment:
Q  29 ggttgttcatacatgaacttggagaaagtgattatggaggttttgcttaaacaaaatcaaac 90  Q
    ||||||||||| ||||||||||| |||||||| |  |||||  |||| ||||||||||||||    
T  4613794 ggttgttcatatatgaacttggacaaagtgatcaatgaggtgctgctgaaacaaaatcaaac 4613855  T

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Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 235
Target Start/End: Complemental strand, 4556605 - 4556557
Alignment:
Q  187 cgacacacattgatatttgacacctaaatgaccccgacatatttagtta 235  Q
    |||||||  ||||||||||| ||||||| |||||||||| |||||||||    
T  4556605 cgacacatgttgatatttgaaacctaaacgaccccgacacatttagtta 4556557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 62
Target Start/End: Complemental strand, 4568116 - 4568076
Alignment:
Q  22 acctggtggttgttcatacatgaacttggagaaagtgatta 62  Q
    |||||||| || |||||||||||||||||| ||||||||||    
T  4568116 acctggtgattcttcatacatgaacttggacaaagtgatta 4568076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 26 - 85
Target Start/End: Original strand, 28000172 - 28000231
Alignment:
Q  26 ggtggttgttcatacatgaacttggagaaagtgattatggaggttttgcttaaacaaaat 85  Q
    |||||||||||||||||||||||||| |||||||||| ||| || ||| |||||||||||    
T  28000172 ggtggttgttcatacatgaacttggacaaagtgattaaggaagtgttgtttaaacaaaat 28000231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 24 - 82
Target Start/End: Complemental strand, 24103060 - 24103002
Alignment:
Q  24 ctggtggttgttcatacatgaacttggagaaagtgattatggaggttttgcttaaacaa 82  Q
    ||||||||| |||||||||||||||||| ||||| |||| ||||||  |||||||||||    
T  24103060 ctggtggtttttcatacatgaacttggacaaagttattaaggaggtcatgcttaaacaa 24103002  T

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Target: scaffold0477 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0477
Description:

Target: scaffold0477; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 24 - 82
Target Start/End: Original strand, 4757 - 4815
Alignment:
Q  24 ctggtggttgttcatacatgaacttggagaaagtgattatggaggttttgcttaaacaa 82  Q
    ||||||| |||||||||||||||||||| |||||||||| ||||||  |||||||||||    
T  4757 ctggtggctgttcatacatgaacttggacaaagtgattaaggaggtcatgcttaaacaa 4815  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 26 - 79
Target Start/End: Complemental strand, 3086479 - 3086426
Alignment:
Q  26 ggtggttgttcatacatgaacttggagaaagtgattatggaggttttgcttaaa 79  Q
    |||||||||||||||||||||||||| ||||| |||| |||||| |||||||||    
T  3086479 ggtggttgttcatacatgaacttggacaaagttattaaggaggtcttgcttaaa 3086426  T

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Target: scaffold0288 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 26 - 82
Target Start/End: Original strand, 3792 - 3848
Alignment:
Q  26 ggtggttgttcatacatgaacttggagaaagtgattatggaggttttgcttaaacaa 82  Q
    |||||| |||||||||||||| |||| ||||| |||| |||||||||||||||||||    
T  3792 ggtggtcgttcatacatgaacctggacaaagttattaaggaggttttgcttaaacaa 3848  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 85
Target Start/End: Complemental strand, 1281173 - 1281114
Alignment:
Q  26 ggtggttgttcatacatgaacttggagaaagtgattatggaggttttgcttaaacaaaat 85  Q
    ||||||||||||||||||||||| || |||||||||| |||  | |||||||||||||||    
T  1281173 ggtggttgttcatacatgaacttcgacaaagtgattaaggaaatgttgcttaaacaaaat 1281114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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